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Google Keyword Rankings for : independent contrasts software
1
Procedures for the Analysis of Comparative Data Using ...
https://academic.oup.com/sysbio/article-abstract/41/1/18/1617342
Felsenstein's (1985) phylogenetically independent contrasts (PIC) method has been widely applied in the literature to analyze cross-species data sets by linear ...
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https://academic.oup.com/sysbio/article-abstract/41/1/18/1617342
Felsenstein's (1985) phylogenetically independent contrasts (PIC) method has been widely applied in the literature to analyze cross-species data sets by linear ...
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2
Phylogenetic comparative methods - Wikipedia
https://en.wikipedia.org/wiki/Phylogenetic_comparative_methods
› wiki › Phylogenetic_compara...
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https://en.wikipedia.org/wiki/Phylogenetic_comparative_methods
› wiki › Phylogenetic_compara...
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3
How to perform phylogenetically independent contrasts
https://www.youtube.com/watch?v=bZ_WVLuWRI0
Josh Banta
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https://www.youtube.com/watch?v=bZ_WVLuWRI0
Josh Banta
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4
A Phylogenetic Independent Contrast Method under ... - bioRxiv
https://www.biorxiv.org/content/10.1101/2021.04.24.441286v1.full
Felsenstein's phylogenetic independent contrast (PIC) method (Felsenstein, 1985) has been widely utilized to correct the non-independence of ...
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https://www.biorxiv.org/content/10.1101/2021.04.24.441286v1.full
Felsenstein's phylogenetic independent contrast (PIC) method (Felsenstein, 1985) has been widely utilized to correct the non-independence of ...
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5
Independent contrasts and regression through the origin
https://hal.archives-ouvertes.fr/hal-00554607/document
comparative data using phylogenetically independent contrasts. ... When a program for regression through the origin is not available, ...
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https://hal.archives-ouvertes.fr/hal-00554607/document
comparative data using phylogenetically independent contrasts. ... When a program for regression through the origin is not available, ...
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6
Phylogenetically Independent Contrasts Using PDAP for ...
https://wiki.duke.edu/download/attachments/131173735/Kamilar_ContrastsWithMesquite_June3.pdf?version=1&modificationDate=1518660042000&api=v2
Mesquite is a point & click software package that runs numerous types of phylogenetic analyses. – Reconstruction of ancestral states ...
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https://wiki.duke.edu/download/attachments/131173735/Kamilar_ContrastsWithMesquite_June3.pdf?version=1&modificationDate=1518660042000&api=v2
Mesquite is a point & click software package that runs numerous types of phylogenetic analyses. – Reconstruction of ancestral states ...
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7
Nonlinear relationships and phylogenetically independent ...
https://onlinelibrary.wiley.com/doi/10.1111/j.1420-9101.2004.00697.x
The phylogenetic independent contrasts method uses phylogenetic ... First, historically theory and software papers were generally separated, ...
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https://onlinelibrary.wiley.com/doi/10.1111/j.1420-9101.2004.00697.x
The phylogenetic independent contrasts method uses phylogenetic ... First, historically theory and software papers were generally separated, ...
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8
20.12 - Phylogenetically independent contrasts
https://biostatistics.letgen.org/mikes-biostatistics-book/additional-topics/phylogenetically-independent-contrasts/
Assumption of independence among the subjects in a study, key assumption. Comparisons among species common experimental approach in evolutionary biology.
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https://biostatistics.letgen.org/mikes-biostatistics-book/additional-topics/phylogenetically-independent-contrasts/
Assumption of independence among the subjects in a study, key assumption. Comparisons among species common experimental approach in evolutionary biology.
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9
Phylogenetically Independent Contrasts - PhyloWiki
http://phylo.wikidot.com/phylogenetically-independent-contrasts
Then we'll generate some phylogenetically independent contrasts # and see how they ... of statistical distributions automatically embedded in the software.
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http://phylo.wikidot.com/phylogenetically-independent-contrasts
Then we'll generate some phylogenetically independent contrasts # and see how they ... of statistical distributions automatically embedded in the software.
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10
The caper package: comparative analysis of phylogenetics ...
https://cran.r-project.org/web/packages/caper/vignettes/caper.pdf
Both programs calculate phylo- genetically independent contrasts in a set of variables and then use linear models of those contrasts to test for evolutionary ...
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https://cran.r-project.org/web/packages/caper/vignettes/caper.pdf
Both programs calculate phylo- genetically independent contrasts in a set of variables and then use linear models of those contrasts to test for evolutionary ...
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11
Phylogenetically independent contrasts
https://lukejharmon.github.io/ilhabela/instruction/2015/07/02/phylogenetic-independent-contrasts/
A more precise algorithm describing how phylogenetic independent contrasts are calculated is provided in Box 4.2, below (from Felsenstein 1985). Each contrast ...
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https://lukejharmon.github.io/ilhabela/instruction/2015/07/02/phylogenetic-independent-contrasts/
A more precise algorithm describing how phylogenetic independent contrasts are calculated is provided in Box 4.2, below (from Felsenstein 1985). Each contrast ...
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12
CAIC v.2.6.9 / MacroCAIC – Calculates Phylogenetically ...
https://mybiosoftware.com/caic-v-2-6-9-macrocaic-calculates-phylogenetically-independent-contrasts-variables.html
CAIC is a freeware comparative analysis package to find and calculates phylogenetically independent contrasts in one or more variables enabling ...
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https://mybiosoftware.com/caic-v-2-6-9-macrocaic-calculates-phylogenetically-independent-contrasts-variables.html
CAIC is a freeware comparative analysis package to find and calculates phylogenetically independent contrasts in one or more variables enabling ...
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13
How to conduct phylogenetic independent contrasts (PIC) with ...
https://www.researchgate.net/post/How_to_conduct_phylogenetic_independent_contrasts_PIC_with_many_X_and_Y_observations
I would like to conduct a phylogenetic independent contrasts (PIC) to compare traits ... Many times, statistical software report 'p' value of 0.000.
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https://www.researchgate.net/post/How_to_conduct_phylogenetic_independent_contrasts_PIC_with_many_X_and_Y_observations
I would like to conduct a phylogenetic independent contrasts (PIC) to compare traits ... Many times, statistical software report 'p' value of 0.000.
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14
Comparative phylogenetics - bionity.com
https://www.bionity.com/en/encyclopedia/Comparative_phylogenetics.html
Accordingly, the list of phylogenetics software shows little overlap with the programs for PCMs ... 1 Applications; 2 Phylogenetically independent contrasts ...
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https://www.bionity.com/en/encyclopedia/Comparative_phylogenetics.html
Accordingly, the list of phylogenetics software shows little overlap with the programs for PCMs ... 1 Applications; 2 Phylogenetically independent contrasts ...
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15
Software - Martins Lab ASU - Arizona State University
https://martins.lab.asu.edu/programs
It applies several Phylogenetic Comparative Methods (e.g., independent contrasts, spatial autocorrelation, phylogenetic GLS, phylogenetic mixed model), ...
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https://martins.lab.asu.edu/programs
It applies several Phylogenetic Comparative Methods (e.g., independent contrasts, spatial autocorrelation, phylogenetic GLS, phylogenetic mixed model), ...
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16
Methods to correct for phylogenetic non-independence 1 ...
https://bio.kuleuven.be/ento/courses/comparative_method.ppt
assumption of independent contrasts: evolution by Brownian motion (drift or fluctuating directional ... http://www.bio.ic.ac.uk/evolve/software/caic/.
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https://bio.kuleuven.be/ento/courses/comparative_method.ppt
assumption of independent contrasts: evolution by Brownian motion (drift or fluctuating directional ... http://www.bio.ic.ac.uk/evolve/software/caic/.
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17
Phylogenetic Comparative Methods - OSF
https://osf.io/ytm5x/download
A variety of software has been used to implement PCMs, but the majority of those ... Phylogenetic independent contrasts (PIC) analysis is an intuitive ...
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https://osf.io/ytm5x/download
A variety of software has been used to implement PCMs, but the majority of those ... Phylogenetic independent contrasts (PIC) analysis is an intuitive ...
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18
Independent Contrasts and PGLS Regression Estimators Are ...
http://www.jcsantosresearch.org/Class_2014_Spring_Comparative/pdf/week_11/Blomberg_etal_2012.pdf
methods; generalized least squares; independent contrasts; regression.] ... can be fitted efficiently with currently available software.
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http://www.jcsantosresearch.org/Class_2014_Spring_Comparative/pdf/week_11/Blomberg_etal_2012.pdf
methods; generalized least squares; independent contrasts; regression.] ... can be fitted efficiently with currently available software.
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19
Species as data points Outline for today - UBC Zoology
https://www.zoology.ubc.ca/~bio501/R/lecturepdf/2019/13.Phylogenetic.pdf
Felsenstein's method of phylogenetically independent contrasts. Under Brownian motion, a, b, ... BAMMtools is an interface to the BAMM program.
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https://www.zoology.ubc.ca/~bio501/R/lecturepdf/2019/13.Phylogenetic.pdf
Felsenstein's method of phylogenetically independent contrasts. Under Brownian motion, a, b, ... BAMMtools is an interface to the BAMM program.
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20
Phylogeny Programs (continued) - Felsenstein/Kuhner lab
https://evolution.genetics.washington.edu/phylip/software.etc2.html
Testing hypotheses of correlated evolution using phylogenetically independent contrasts: sensitivity to deviations from Brownian motion. Systematic Biology 45: ...
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https://evolution.genetics.washington.edu/phylip/software.etc2.html
Testing hypotheses of correlated evolution using phylogenetically independent contrasts: sensitivity to deviations from Brownian motion. Systematic Biology 45: ...
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21
(PDF) Testing for phylogenetic signal in comparative data
https://typeset.io/papers/testing-for-phylogenetic-signal-in-comparative-data-3lvcin7t3t
We present new methods for continuous-valued characters that can be implemented with either phylogenetically independent contrasts or generalized ...
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https://typeset.io/papers/testing-for-phylogenetic-signal-in-comparative-data-3lvcin7t3t
We present new methods for continuous-valued characters that can be implemented with either phylogenetically independent contrasts or generalized ...
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22
body size relationship in new world terrestrial carnivora
https://link.springer.com/article/10.1023/A:1020210321776
So, recent claims that using independent contrasts in ecological research can ... (1992) Worldmap: Priority Areas for Biodiversity (Demonstration Program).
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https://link.springer.com/article/10.1023/A:1020210321776
So, recent claims that using independent contrasts in ecological research can ... (1992) Worldmap: Priority Areas for Biodiversity (Demonstration Program).
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23
Analyzing Continuous Characters - Mesquite
https://www.mesquiteproject.org/Analyzing%20Continuous%20Characters.html
Felsenstein's independent contrasts. Analyses of character correlations can be done by the separately-available PDAP package. This is described briefly here.
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https://www.mesquiteproject.org/Analyzing%20Continuous%20Characters.html
Felsenstein's independent contrasts. Analyses of character correlations can be done by the separately-available PDAP package. This is described briefly here.
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24
How to use categorical vectors in ape (r) for phylogenetic ...
https://stackoverflow.com/questions/35785307/how-to-use-categorical-vectors-in-ape-r-for-phylogenetic-independent-contrasts
Independent contrasts are only for continuous data. To test for correlations between discrete variables while accounting for phylogenetic ...
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https://stackoverflow.com/questions/35785307/how-to-use-categorical-vectors-in-ape-r-for-phylogenetic-independent-contrasts
Independent contrasts are only for continuous data. To test for correlations between discrete variables while accounting for phylogenetic ...
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25
Phylocom: software for the analysis of phylogenetic ... - OA.mg
https://oa.mg/work/10.1093/bioinformatics/btn358
Phylocom: software for the analysis of phylogenetic community structure and ... Analysis of Comparative Data Using Phylogenetically Independent Contrasts.
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https://oa.mg/work/10.1093/bioinformatics/btn358
Phylocom: software for the analysis of phylogenetic community structure and ... Analysis of Comparative Data Using Phylogenetically Independent Contrasts.
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26
iPToL - Confluence
https://cyverse.atlassian.net/wiki/spaces/iptol/pages/242171346/TE_Tools+and+Software
simmap1. · simmap2. · treetapper, a website for finding tools to better understand biology using phylogentic trees. · CONTRAST (PHYLIP), Phylogenetic independent ...
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https://cyverse.atlassian.net/wiki/spaces/iptol/pages/242171346/TE_Tools+and+Software
simmap1. · simmap2. · treetapper, a website for finding tools to better understand biology using phylogentic trees. · CONTRAST (PHYLIP), Phylogenetic independent ...
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27
Pairwise comparisons across species are problematic ... - PNAS
https://www.pnas.org/doi/10.1073/pnas.1707515115
Phylogenetic independent contrasts (PICs) (2), the most widely used ... Framework Program Horizon 2020 (2014–2020) European Research Council Grant 648861.
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https://www.pnas.org/doi/10.1073/pnas.1707515115
Phylogenetic independent contrasts (PICs) (2), the most widely used ... Framework Program Horizon 2020 (2014–2020) European Research Council Grant 648861.
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28
Comparative Methods and Data Analysis in R
http://www2.hawaii.edu/~mbutler/Rquickstart/Rcomparative.pdf
2.2.3 Running Independent Contrasts using ape . ... This software is now encoded so that it is not possible to install from someone else's ...
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http://www2.hawaii.edu/~mbutler/Rquickstart/Rcomparative.pdf
2.2.3 Running Independent Contrasts using ape . ... This software is now encoded so that it is not possible to install from someone else's ...
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29
Phylogeny, trees and morphospace - Geometric Morphometrics
https://morphometrics.earth.indiana.edu/Lectures/Lecture%2010%20Phylogeny%20and%20morphometrics.pdf
independent contrasts, phylogenetic regression) http://mypage.iu.edu/~pdpolly/Software.html. Morphometrics for Mathematica package. (trees into morphospace ...
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https://morphometrics.earth.indiana.edu/Lectures/Lecture%2010%20Phylogeny%20and%20morphometrics.pdf
independent contrasts, phylogenetic regression) http://mypage.iu.edu/~pdpolly/Software.html. Morphometrics for Mathematica package. (trees into morphospace ...
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30
72Abs
https://biology.ucr.edu/people/faculty/Garland/DiazAbs.html
Free software is widely available only for independent contrasts, but has limited application of the latter two methods. Therefore, using the freely ...
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https://biology.ucr.edu/people/faculty/Garland/DiazAbs.html
Free software is widely available only for independent contrasts, but has limited application of the latter two methods. Therefore, using the freely ...
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31
Comparative methods for studying cultural trait evolution
https://escholarship.org/content/qt447858m7/qt447858m7_noSplash_643c7e9d994f82b848128351d586d214.pdf
sitivity of two comparative methods (independent contrasts and ... The output from this program, run for 1,000 simulations that iter-.
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https://escholarship.org/content/qt447858m7/qt447858m7_noSplash_643c7e9d994f82b848128351d586d214.pdf
sitivity of two comparative methods (independent contrasts and ... The output from this program, run for 1,000 simulations that iter-.
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32
Comparative Methods for Studying Primate Adaptation and ...
https://www.bu.edu/phylogeny/publications/Nunn%20and%20Barton%202001%20EVOL%20ANTHROPL%20Cover.pdf
independent contrasts12 and the con- ... Many computer programs have been developed to implement phylogenetic ... Phylogenetically Independent Contrasts.
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https://www.bu.edu/phylogeny/publications/Nunn%20and%20Barton%202001%20EVOL%20ANTHROPL%20Cover.pdf
independent contrasts12 and the con- ... Many computer programs have been developed to implement phylogenetic ... Phylogenetically Independent Contrasts.
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33
The Independent Evolution Method Is Not a Viable ... - PLOS
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0144147
› plosone › article › journal.po...
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https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0144147
› plosone › article › journal.po...
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34
Phylogenetic approaches in comparative physiology
https://repositorio.uc.cl/xmlui/bitstream/handle/11534/43639/Phylogenetic%20approaches%20in%20comparative%20physiology.pdf
statistical methods: independent contrasts (IC; worked example in Fig. ... evolution.genetics.washington.edu/phylip/software.html).
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https://repositorio.uc.cl/xmlui/bitstream/handle/11534/43639/Phylogenetic%20approaches%20in%20comparative%20physiology.pdf
statistical methods: independent contrasts (IC; worked example in Fig. ... evolution.genetics.washington.edu/phylip/software.html).
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35
A method for assessing phylogenetic least squares models for ...
https://faculty.sites.iastate.edu/dcadams/files/inline-files/2014-evol-adams-dpgls.pdf
Phylogenetic regression, which can be implemented either using independent contrasts (PIC: Felsenstein 1985) or gen- eralized least squares (PGLS: Grafen 1989; ...
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https://faculty.sites.iastate.edu/dcadams/files/inline-files/2014-evol-adams-dpgls.pdf
Phylogenetic regression, which can be implemented either using independent contrasts (PIC: Felsenstein 1985) or gen- eralized least squares (PGLS: Grafen 1989; ...
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36
On the Analysis of Evolutionary Change along Single ...
https://www.journals.uchicago.edu/doi/pdfplus/10.1086/588078
Keywords: independent contrasts, comparative method, evolutionary rate, quantitative characters ... formed all analyses using software available on request.
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https://www.journals.uchicago.edu/doi/pdfplus/10.1086/588078
Keywords: independent contrasts, comparative method, evolutionary rate, quantitative characters ... formed all analyses using software available on request.
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37
TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT ...
https://fishlab.ucdavis.edu/wp-content/uploads/sites/397/2020/05/Omeara-et-al-2006.pdf
evolution, used in independent contrasts (Felsenstein 1985) and estimation of ancestral states (Schluter et al. 1997). In. Brownian motion, at each instant ...
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https://fishlab.ucdavis.edu/wp-content/uploads/sites/397/2020/05/Omeara-et-al-2006.pdf
evolution, used in independent contrasts (Felsenstein 1985) and estimation of ancestral states (Schluter et al. 1997). In. Brownian motion, at each instant ...
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38
Identical inferences about correlated evolution arise ... - arXiv
https://arxiv.org/pdf/1310.0035
ancestral state reconstruction and independent contrasts. Michael G. Elliot ... Software for maximum likelihood estimation of.
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https://arxiv.org/pdf/1310.0035
ancestral state reconstruction and independent contrasts. Michael G. Elliot ... Software for maximum likelihood estimation of.
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39
CRAN Task View: Phylogenetics, Especially Comparative ...
https://mran.microsoft.com/snapshot/2015-11-09/web/views/Phylogenetics.html
BAMMtools is an interface to the BAMM program to allow visualization of rate ... Trait evolution: Independent contrasts for continuous characters can be ...
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https://mran.microsoft.com/snapshot/2015-11-09/web/views/Phylogenetics.html
BAMMtools is an interface to the BAMM program to allow visualization of rate ... Trait evolution: Independent contrasts for continuous characters can be ...
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40
Phylocom - phylodiversity.net
https://phylodiversity.net/phylocom/
Phylocom: Software for the Analysis of Phylogenetic Community Structure and ... conservatism metrics, independent contrasts, lineages through time).
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https://phylodiversity.net/phylocom/
Phylocom: Software for the Analysis of Phylogenetic Community Structure and ... conservatism metrics, independent contrasts, lineages through time).
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41
7.2 - Contrasts | STAT 555
https://online.stat.psu.edu/stat555/node/73/
A contrast is essentially a difference in regression coefficients. ... Sophisticated statistical software allows you to specify the factors and error terms, ...
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https://online.stat.psu.edu/stat555/node/73/
A contrast is essentially a difference in regression coefficients. ... Sophisticated statistical software allows you to specify the factors and error terms, ...
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42
Phylocom - Cam Webb
https://camwebb.info/doc/phylocom.html
Software for the Analysis of Phylogenetic Community Structure and Character ... conservatism metrics, independent contrasts, lineages through time).
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https://camwebb.info/doc/phylocom.html
Software for the Analysis of Phylogenetic Community Structure and Character ... conservatism metrics, independent contrasts, lineages through time).
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43
Phylogenetic approaches in comparative physiology
https://journals.biologists.com/jeb/article/208/16/3015/15676/Phylogenetic-approaches-in-comparative-physiology
For a general listing of phylogeny-related programs, see the website ... In the context of phylogenetically independent contrasts, ...
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https://journals.biologists.com/jeb/article/208/16/3015/15676/Phylogenetic-approaches-in-comparative-physiology
For a general listing of phylogeny-related programs, see the website ... In the context of phylogenetically independent contrasts, ...
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44
Using phylogenetic information and the comparative method ...
https://marquet.cl/wp-content/uploads/2016/10/131_hernandez_et_al_2013.pdf
Macroecology is a research program that focuses on the search for general principles or natural ... The CSCM includes phylogenetic independent contrasts.
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https://marquet.cl/wp-content/uploads/2016/10/131_hernandez_et_al_2013.pdf
Macroecology is a research program that focuses on the search for general principles or natural ... The CSCM includes phylogenetic independent contrasts.
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45
Arbor Workflows - Cornell blogs
https://blogs.cornell.edu/specht/arbor-workflows/
Arbor is a web-based software package for phylogenetic comparative analyses ... A sample workflow for calculating phylogenetic independent contrasts (PICs) ...
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https://blogs.cornell.edu/specht/arbor-workflows/
Arbor is a web-based software package for phylogenetic comparative analyses ... A sample workflow for calculating phylogenetic independent contrasts (PICs) ...
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46
Why species are not independent data points and what to do ...
https://slideplayer.com/slide/7838671/
2 Independent contrasts can be calculated between all nodes: X4 - X5 X2 - X3 ... one of many independent contrasts software options Data [with variability ...
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https://slideplayer.com/slide/7838671/
2 Independent contrasts can be calculated between all nodes: X4 - X5 X2 - X3 ... one of many independent contrasts software options Data [with variability ...
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47
Exercise #4 - 10kTrees
https://10ktrees.nunn-lab.org/exercises/10kTrees_Exercise4.pdf
independent contrasts and phylogenetic generalized least squares (PGLS) in R, and methods to study correlated evolution in the program BayesTraits.
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https://10ktrees.nunn-lab.org/exercises/10kTrees_Exercise4.pdf
independent contrasts and phylogenetic generalized least squares (PGLS) in R, and methods to study correlated evolution in the program BayesTraits.
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48
Package 'caper'
http://www2.uaem.mx/r-mirror/web/packages/caper/caper.pdf
Anova and model checking methods for independent contrast models. ... Polytomies - more detail here The Mac Classic program CAIC used 1 for ...
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http://www2.uaem.mx/r-mirror/web/packages/caper/caper.pdf
Anova and model checking methods for independent contrast models. ... Polytomies - more detail here The Mac Classic program CAIC used 1 for ...
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49
Controlling for non-independence in comparative analysis of ...
https://europepmc.org/article/pmc/pmc3081573
While the number of independent contrasts for n species in a fully bifurcating ... The first [34] and most widely applied model in analytical software (e.g. ...
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https://europepmc.org/article/pmc/pmc3081573
While the number of independent contrasts for n species in a fully bifurcating ... The first [34] and most widely applied model in analytical software (e.g. ...
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50
Ecological Archives E096-256-A2
https://esapubs.org/archive/ecol/E096/256/appendix-B.php
... Manual to compute phylogenetic independent contrasts for variables differing in the strength of phylogenetic signal, using the statistical software R.
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https://esapubs.org/archive/ecol/E096/256/appendix-B.php
... Manual to compute phylogenetic independent contrasts for variables differing in the strength of phylogenetic signal, using the statistical software R.
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51
What is Arbor?
https://www.arborworkflows.com/tutorials/otstutorials/what-is-arbor/
A sample workflow for calculating phylogenetic independent contrasts (PICs) to test for an evolutionary correlation between two traits. The PIC ...
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https://www.arborworkflows.com/tutorials/otstutorials/what-is-arbor/
A sample workflow for calculating phylogenetic independent contrasts (PICs) to test for an evolutionary correlation between two traits. The PIC ...
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52
Independent contrasts
https://botanika.prf.jcu.cz/suspa/vyuka/materialy/CEphylogenyPracticals.ppt
independent contrasts. Independent contrasts can be calculated between all nodes: ... Compare: one of many independent contrasts software options.
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https://botanika.prf.jcu.cz/suspa/vyuka/materialy/CEphylogenyPracticals.ppt
independent contrasts. Independent contrasts can be calculated between all nodes: ... Compare: one of many independent contrasts software options.
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53
[PDF] Phylocom: software for the analysis of phylogenetic ...
https://www.semanticscholar.org/paper/Phylocom%3A-software-for-the-analysis-of-phylogenetic-Webb-Ackerly/72e102321f73a6c0265c0dde7591dff76733d3f8
Picante is a software package that provides a comprehensive set of ... of Comparative Data Using Phylogenetically Independent Contrasts.
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https://www.semanticscholar.org/paper/Phylocom%3A-software-for-the-analysis-of-phylogenetic-Webb-Ackerly/72e102321f73a6c0265c0dde7591dff76733d3f8
Picante is a software package that provides a comprehensive set of ... of Comparative Data Using Phylogenetically Independent Contrasts.
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54
Handout for the Phylogenetics Lecture - Evolutionary Biology
https://evol.bio.lmu.de/_statgen/compevol/ws1011/PhyloHandout.pdf
10.4 Software for joint estimation of phylogenies and alignments . ... 11.2 Computing Independent Contrasts by Pruning the Tree .
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https://evol.bio.lmu.de/_statgen/compevol/ws1011/PhyloHandout.pdf
10.4 Software for joint estimation of phylogenies and alignments . ... 11.2 Computing Independent Contrasts by Pruning the Tree .
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55
CRAN Task View: Phylogenetics, Especially Comparative ...
http://cran.nexr.com/web/views/Phylogenetics.html
Rphylip wraps PHYLIP , a broad variety of programs for tree inference under ... Trait evolution: Independent contrasts for continuous characters can be ...
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http://cran.nexr.com/web/views/Phylogenetics.html
Rphylip wraps PHYLIP , a broad variety of programs for tree inference under ... Trait evolution: Independent contrasts for continuous characters can be ...
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56
Phylogenetics for Mathematica - Indiana University
https://pdpolly.pages.iu.edu/Software/Guide%20to%20PollyPhylogenetics%205.1.pdf
http://pages.iu.edu/~pdpolly/Software.html. WALLABY ... This function calculates standardized independent contrasts (Felsenstein, 1985, 2004) for a.
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https://pdpolly.pages.iu.edu/Software/Guide%20to%20PollyPhylogenetics%205.1.pdf
http://pages.iu.edu/~pdpolly/Software.html. WALLABY ... This function calculates standardized independent contrasts (Felsenstein, 1985, 2004) for a.
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57
Evolutionary and Ecological Analyses using Phylogenies in R
http://www.evovert.com/R_using_Phylogenies.html
... for ecological and evolutionary analyses in the open-source statistical software R. This means the ... •Correlated evolution using Independent Contrasts.
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http://www.evovert.com/R_using_Phylogenies.html
... for ecological and evolutionary analyses in the open-source statistical software R. This means the ... •Correlated evolution using Independent Contrasts.
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58
Shedding light on the 'dark side' of phylogenetic comparative ...
https://researchers.mq.edu.au/files/62223960/Publisher%20version%20(open%20access).pdf
PHYLOGENETIC INDEPENDENT CONTRASTS. The phylogenetic independent contrasts method uses phyloge- ... First, historically theory and software.
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https://researchers.mq.edu.au/files/62223960/Publisher%20version%20(open%20access).pdf
PHYLOGENETIC INDEPENDENT CONTRASTS. The phylogenetic independent contrasts method uses phyloge- ... First, historically theory and software.
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59
Phylogenetic Targeting - Bioinformatics Leipzig
http://www.bioinf.uni-leipzig.de/~achristian/misc/Arnold_MasterThesis_PhylogeneticTargeting.pdf
ods (e.g., phylogenetic independent contrasts [18]) are the most general for asking ... Mesquite is software for evolutionary biology, designed to help ...
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http://www.bioinf.uni-leipzig.de/~achristian/misc/Arnold_MasterThesis_PhylogeneticTargeting.pdf
ods (e.g., phylogenetic independent contrasts [18]) are the most general for asking ... Mesquite is software for evolutionary biology, designed to help ...
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60
phylogenetic Independent contrasts with unresolved tree
https://biology.stackexchange.com/questions/16724/phylogenetic-independent-contrasts-with-unresolved-tree
› questions › phylog...
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https://biology.stackexchange.com/questions/16724/phylogenetic-independent-contrasts-with-unresolved-tree
› questions › phylog...
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61
Continuous - Mark Pagel
http://www.evolution.reading.ac.uk/Files/ContinuousManual.pdf
Continuous is a computer program that implements a generalised least squares (GLS) ... species, without the need to calculate independent contrasts or other ...
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http://www.evolution.reading.ac.uk/Files/ContinuousManual.pdf
Continuous is a computer program that implements a generalised least squares (GLS) ... species, without the need to calculate independent contrasts or other ...
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62
A SIMULATION STUDY OF CONTINUOUS VARIABLES - Utexas
http://www.sbs.utexas.edu/bio386/Readings/Literature/Quantitative%20Char/Issac.Evol.57.18.contin.char.pdf
Several recent studies have used nested sister-clade comparisons to test hypotheses ... with phylogenetically independent contrasts in the trait, X.
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http://www.sbs.utexas.edu/bio386/Readings/Literature/Quantitative%20Char/Issac.Evol.57.18.contin.char.pdf
Several recent studies have used nested sister-clade comparisons to test hypotheses ... with phylogenetically independent contrasts in the trait, X.
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63
Phylogeographic Estimation and Simulation of Global ...
https://pages.uoregon.edu/slouca/LoucaLab/SECTION_Publications/MODULE_Publications/Files/Louca2021SBM.pdf
[Independent contrasts; phylogenetic; random walk; simulation; spherical Brownian ... geographical locations within the BEAST software.
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https://pages.uoregon.edu/slouca/LoucaLab/SECTION_Publications/MODULE_Publications/Files/Louca2021SBM.pdf
[Independent contrasts; phylogenetic; random walk; simulation; spherical Brownian ... geographical locations within the BEAST software.
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64
Coevol - UFRC Help and Documentation
https://help.rc.ufl.edu/doc/Coevol
Coevol is a Bayesian inference program using Markov Chain Monte Carlo ... and phylogenetically independent contrasts (Felsenstein, 1985; ...
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https://help.rc.ufl.edu/doc/Coevol
Coevol is a Bayesian inference program using Markov Chain Monte Carlo ... and phylogenetically independent contrasts (Felsenstein, 1985; ...
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65
File:Phylogenetically Independent Contrasts 1.jpg
https://commons.wikimedia.org/wiki/File:Phylogenetically_Independent_Contrasts_1.jpg
File:Phylogenetically Independent Contrasts 1.jpg ... Version 1.2 or any later version published by the Free Software Foundation; ...
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https://commons.wikimedia.org/wiki/File:Phylogenetically_Independent_Contrasts_1.jpg
File:Phylogenetically Independent Contrasts 1.jpg ... Version 1.2 or any later version published by the Free Software Foundation; ...
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66
Statistical Issues and Assumptions of Phylogenetic ...
https://www.eva.mpg.de/documents/Springer/Mundry_Statistical_Modern-phylogenetic-comparative-methods_2014_2172392.pdf
us to control for residuals being potentially non-independent due to the phyloge- ... phylogenetically independent contrasts: sensitivity to deviations from ...
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https://www.eva.mpg.de/documents/Springer/Mundry_Statistical_Modern-phylogenetic-comparative-methods_2014_2172392.pdf
us to control for residuals being potentially non-independent due to the phyloge- ... phylogenetically independent contrasts: sensitivity to deviations from ...
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67
Niche evolution and adaptive radiation: Testing the order of ...
https://www.usgs.gov/publications/niche-evolution-and-adaptive-radiation-testing-order-trait-divergence
... do traits related to within-community niche differences (?? niche) evolve before or ... based on a modification of the method of independent contrasts.
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https://www.usgs.gov/publications/niche-evolution-and-adaptive-radiation-testing-order-trait-divergence
... do traits related to within-community niche differences (?? niche) evolve before or ... based on a modification of the method of independent contrasts.
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68
BIOINFORMATICS APPLICATIONS NOTE
http://lajeunesse.myweb.usf.edu/papers/Lajeunesse_2011_Bioinformatics.pdf
phyloMeta: a program for phylogenetic comparative analyses ... (1985) phylogenetically independent contrasts, that branch lengths.
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http://lajeunesse.myweb.usf.edu/papers/Lajeunesse_2011_Bioinformatics.pdf
phyloMeta: a program for phylogenetic comparative analyses ... (1985) phylogenetically independent contrasts, that branch lengths.
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69
Examples of application of comparative methods in R - GitHub
https://github.com/simjoly/CourseComparativeMethods
... of phylogenetic comparative methods in the statistical software R. ... The Brownian Motion (BM) model, Phylogenetic Independent Contrasts (PIC), ...
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https://github.com/simjoly/CourseComparativeMethods
... of phylogenetic comparative methods in the statistical software R. ... The Brownian Motion (BM) model, Phylogenetic Independent Contrasts (PIC), ...
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70
MorphoJ Change Log
https://morphometrics.uk/MorphoJ_guide/frameset.htm?changelog.htm
The program also fixes a bug in the computation of independent contrasts (when mapping data onto a phylogeny), which concerned the handling of zero-length ...
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https://morphometrics.uk/MorphoJ_guide/frameset.htm?changelog.htm
The program also fixes a bug in the computation of independent contrasts (when mapping data onto a phylogeny), which concerned the handling of zero-length ...
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71
Morphometrics and the comparative method: studying the ...
http://www.italian-journal-of-mammalogy.it/pdf-77240-13393?filename=13393.pdf
with the problem, known as phylogenetic independent contrasts. ... squared-change parsimony, depending on software, but the approaches.
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http://www.italian-journal-of-mammalogy.it/pdf-77240-13393?filename=13393.pdf
with the problem, known as phylogenetic independent contrasts. ... squared-change parsimony, depending on software, but the approaches.
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72
Modern Phylogenetic Comparative Methods and Their ...
http://consevol.org/pdf/Books/Chapter%202%20Modern%20Phylogenetic%20Comparative%20Methods%20book.pdf
differences in trait states are interpreted as resulting from independent evolution ... In some phylogenetic reconstruction programs (e.g.,.
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http://consevol.org/pdf/Books/Chapter%202%20Modern%20Phylogenetic%20Comparative%20Methods%20book.pdf
differences in trait states are interpreted as resulting from independent evolution ... In some phylogenetic reconstruction programs (e.g.,.
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73
Calculating independent contrasts for the comparative study of ...
http://www.dwaxman.com/Papers/Comparative.PDF
method of independent contrasts (Felsenstein, 1985;. Harvey and Pagel, 1991). ... software requires a tree with branch lengths, and this may.
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http://www.dwaxman.com/Papers/Comparative.PDF
method of independent contrasts (Felsenstein, 1985;. Harvey and Pagel, 1991). ... software requires a tree with branch lengths, and this may.
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74
The seven deadly sins of comparative analysis - Research
https://bio.research.ucsc.edu/~barrylab/classes/climate_change/Freckleton_2009.pdf
without accounting for evolutionary history differences ... independent contrasts; ... had to rely on relatively inflexible proprietary software packages.
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https://bio.research.ucsc.edu/~barrylab/classes/climate_change/Freckleton_2009.pdf
without accounting for evolutionary history differences ... independent contrasts; ... had to rely on relatively inflexible proprietary software packages.
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75
Bayesian models for comparative analysis integrating ...
https://bmcecolevol.biomedcentral.com/articles/10.1186/1471-2148-12-102
Although there is some application-specific software for fitting ... to apply the method of independent contrasts [11], or alternatively, ...
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https://bmcecolevol.biomedcentral.com/articles/10.1186/1471-2148-12-102
Although there is some application-specific software for fitting ... to apply the method of independent contrasts [11], or alternatively, ...
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76
Michael E. Dillon - University of California, Berkeley
https://www.ocf.berkeley.edu/~dillonm/tools.php
LaTeX for scientific writing. Linux Open Source Software ... Phylogenetically independent contrasts in R using .fic file output from PDAP.
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https://www.ocf.berkeley.edu/~dillonm/tools.php
LaTeX for scientific writing. Linux Open Source Software ... Phylogenetically independent contrasts in R using .fic file output from PDAP.
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77
What is Software? Definition, Types and Examples - TechTarget
https://www.techtarget.com/searchapparchitecture/definition/software
Learn about the different types of software, what they do and how they function. ... Here are the key differences between system and application software.
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https://www.techtarget.com/searchapparchitecture/definition/software
Learn about the different types of software, what they do and how they function. ... Here are the key differences between system and application software.
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78
Spring Independent School District / Spring ISD Home
https://www.springisd.org/
Las clases se reanudarán y las oficinas volverán a abrir el lunes 28 de noviembre. OK, got it. View important message. Skip to Main Content. High Contrast.
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https://www.springisd.org/
Las clases se reanudarán y las oficinas volverán a abrir el lunes 28 de noviembre. OK, got it. View important message. Skip to Main Content. High Contrast.
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79
Phylogenetic Comparative Methods (PCMs) in R - R Functions
https://rfunctions.blogspot.com/2017/07/phylogenetic-comparative-methods-pcms.html
We'll see two PCMs to test for correlated trait evolution: using Phylogenetic Independent Contrasts (PIC) and using Phylogenetic Generalized ...
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https://rfunctions.blogspot.com/2017/07/phylogenetic-comparative-methods-pcms.html
We'll see two PCMs to test for correlated trait evolution: using Phylogenetic Independent Contrasts (PIC) and using Phylogenetic Generalized ...
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80
Family Independence Temporary Assistance (FITAP)
https://www.dcfs.louisiana.gov/page/fitap
FITAP Benefits. Louisiana is increasing the cash benefit amounts available through the federal Temporary Assistance for Needy Families (TANF) program for ...
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https://www.dcfs.louisiana.gov/page/fitap
FITAP Benefits. Louisiana is increasing the cash benefit amounts available through the federal Temporary Assistance for Needy Families (TANF) program for ...
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81
Contrast Security | Application Security Software
https://www.contrastsecurity.com/
Contrast Security application security software unifies security and development with one DevSecOps platform and increases accuracy and productivity.
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https://www.contrastsecurity.com/
Contrast Security application security software unifies security and development with one DevSecOps platform and increases accuracy and productivity.
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82
The GNU General Public License v3.0
https://www.gnu.org/licenses/gpl-3.0.en.html
The licenses for most software and other practical works are designed to take away your freedom to share and change the works. By contrast, the GNU General ...
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https://www.gnu.org/licenses/gpl-3.0.en.html
The licenses for most software and other practical works are designed to take away your freedom to share and change the works. By contrast, the GNU General ...
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83
Phylo.io a new interactive way of visualising and comparing ...
https://lab.dessimoz.org/blog/2016/04/28/phylo-io-software-to-visualise-and-compare-phylogenetic-trees
This mode allows to compare two trees computed using different tools or different models. Similarities and differences are highlighted using a ...
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https://lab.dessimoz.org/blog/2016/04/28/phylo-io-software-to-visualise-and-compare-phylogenetic-trees
This mode allows to compare two trees computed using different tools or different models. Similarities and differences are highlighted using a ...
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84
International Monetary Fund - Homepage
https://www.imf.org/en/Home
IMF and Ukrainian Authorities Reach Staff Level Agreement on Program ... for a Staff Monitored Program with Executive Board Involvement-Press Release; ...
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https://www.imf.org/en/Home
IMF and Ukrainian Authorities Reach Staff Level Agreement on Program ... for a Staff Monitored Program with Executive Board Involvement-Press Release; ...
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85
ANOVA Test: Definition, Types, Examples, SPSS
https://www.statisticshowto.com/probability-and-statistics/hypothesis-testing/anova/
One-way or two-way refers to the number of independent variables (IVs) in your ... In a one-way ANOVA, variability is due to the differences between groups ...
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https://www.statisticshowto.com/probability-and-statistics/hypothesis-testing/anova/
One-way or two-way refers to the number of independent variables (IVs) in your ... In a one-way ANOVA, variability is due to the differences between groups ...
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86
Brookings - Quality. Independence. Impact.
https://www.brookings.edu/
About Us · Research Programs · Find an Expert · Careers · Contact · Terms and Conditions · Brookings Privacy Policy; Copyright 2022 The Brookings ...
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https://www.brookings.edu/
About Us · Research Programs · Find an Expert · Careers · Contact · Terms and Conditions · Brookings Privacy Policy; Copyright 2022 The Brookings ...
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87
Working Solutions - Remote Work From Home Jobs
https://jobs.workingsolutions.com/
Offering work-at-home, independent contractor opportunities. Schedule your own hours while you work from home.
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https://jobs.workingsolutions.com/
Offering work-at-home, independent contractor opportunities. Schedule your own hours while you work from home.
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88
Difference between JDK, JRE and JVM - Javatpoint
https://www.javatpoint.com/difference-between-jdk-jre-and-jvm
We must understand the differences between JDK, JRE, and JVM before ... The Java Runtime Environment is a set of software tools which are used for ...
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https://www.javatpoint.com/difference-between-jdk-jre-and-jvm
We must understand the differences between JDK, JRE, and JVM before ... The Java Runtime Environment is a set of software tools which are used for ...
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89
Open eVision are image analysis libraries and software Tools
https://www.euresys.com/en/Products/Machine-Vision-Software/Open-eVision-Libraries
Hardware-independent image processing and analysis libraries for machine vision inspection applications · Compatible with any image source, including frame ...
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https://www.euresys.com/en/Products/Machine-Vision-Software/Open-eVision-Libraries
Hardware-independent image processing and analysis libraries for machine vision inspection applications · Compatible with any image source, including frame ...
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90
Keiser University Alumna Now Serving as OTA Program ...
https://www.keiseruniversity.edu/keiser-university-alumna-now-serving-as-ota-program-director-shares-insights-with-industry-colleagues/
In contrast, the more common secondary lymphedema is caused by 'irregular ... Keiser University is a private, independent, non-profit ...
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https://www.keiseruniversity.edu/keiser-university-alumna-now-serving-as-ota-program-director-shares-insights-with-industry-colleagues/
In contrast, the more common secondary lymphedema is caused by 'irregular ... Keiser University is a private, independent, non-profit ...
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91
Rural Health Scholars Program offers students opportunity to ...
https://ldh.la.gov/news/ruralhealthscholars
Southcare Medical Clinic, Abbeville; Southeast Community Health System, Independence, Kentwood, Greensburg and Albany; St. James Primary Care ...
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https://ldh.la.gov/news/ruralhealthscholars
Southcare Medical Clinic, Abbeville; Southeast Community Health System, Independence, Kentwood, Greensburg and Albany; St. James Primary Care ...
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92
Adaptive duplication and genetic diversification of protein ...
https://www.science.org/doi/10.1126/sciadv.add7540
These differences between bats and other mammals, ... event was then presumably followed by independent lineage-specific duplications (Fig.
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https://www.science.org/doi/10.1126/sciadv.add7540
These differences between bats and other mammals, ... event was then presumably followed by independent lineage-specific duplications (Fig.
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93
Affidea wins the "Diagnostics and Primary Care "Award at the ...
https://www.yahoo.com/lifestyle/affidea-wins-diagnostics-primary-care-120000200.html
Recently, Affidea has taken the program to the next level with the launch of ... The project's next step is contrast media data management, ...
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https://www.yahoo.com/lifestyle/affidea-wins-diagnostics-primary-care-120000200.html
Recently, Affidea has taken the program to the next level with the launch of ... The project's next step is contrast media data management, ...
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