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Google Keyword Rankings for : pseudo time integration
1
What is pseudo time-stepping?
https://scicomp.stackexchange.com/questions/7093/what-is-pseudo-time-stepping
Pseudo time-stepping, probably better known as pseudo-transient continuation, is the technique of solving for the steady-state solution of ...
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https://scicomp.stackexchange.com/questions/7093/what-is-pseudo-time-stepping
Pseudo time-stepping, probably better known as pseudo-transient continuation, is the technique of solving for the steady-state solution of ...
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2
Pseudo-Time - an overview | ScienceDirect Topics
https://www.sciencedirect.com/topics/mathematics/pseudo-time
A pseudo-time is introduced and the solution is marched to a steady state using standard acceleration techniques such as local time stepping, grid sequencing ...
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https://www.sciencedirect.com/topics/mathematics/pseudo-time
A pseudo-time is introduced and the solution is marched to a steady state using standard acceleration techniques such as local time stepping, grid sequencing ...
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3
Pseudo Time Stepping for Laminar Flow Models
https://doc.comsol.com/5.5/doc/com.comsol.help.cfd/cfd_ug_fluidflow_single.06.080.html
Pseudo time stepping is not active per default. The pseudo time step can be chosen individually for each element based on the local CFL number:.
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https://doc.comsol.com/5.5/doc/com.comsol.help.cfd/cfd_ug_fluidflow_single.06.080.html
Pseudo time stepping is not active per default. The pseudo time step can be chosen individually for each element based on the local CFL number:.
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4
Integrated pseudotime analysis of human pre-implantation ...
https://pubmed.ncbi.nlm.nih.gov/34004179/
Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification.
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https://pubmed.ncbi.nlm.nih.gov/34004179/
Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification.
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5
Pseudo-Time - Upstream Oil & Gas
https://www.ihsenergy.ca/support/documentation_ca/WellTest/2019_1/content/html_files/reference_materials/time_functions/pseudo-time.htm
Note that the units for this definition of pseudo-time are hr/cp psi-1. In order to convert this unit to hr, the integral is multiplied by mgi c ...
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https://www.ihsenergy.ca/support/documentation_ca/WellTest/2019_1/content/html_files/reference_materials/time_functions/pseudo-time.htm
Note that the units for this definition of pseudo-time are hr/cp psi-1. In order to convert this unit to hr, the integral is multiplied by mgi c ...
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6
Pseudo-Time Integration
https://web.stanford.edu/group/frg/course_work/AA214/CA-AA214-Ch9.pdf
In the solver, pseudo-time stepping is performed explicitly with. P-multigrid convergence acceleration. The choice of explicit methods is motivated by current ...
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https://web.stanford.edu/group/frg/course_work/AA214/CA-AA214-Ch9.pdf
In the solver, pseudo-time stepping is performed explicitly with. P-multigrid convergence acceleration. The choice of explicit methods is motivated by current ...
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7
PseudotimeDE: inference of differential gene expression ...
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02341-y
Pseudotime inference aims to infer the ordering of cells along a lineage based on the cells' gene expression profiles measured by scRNA-seq, and ...
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https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02341-y
Pseudotime inference aims to infer the ordering of cells along a lineage based on the cells' gene expression profiles measured by scRNA-seq, and ...
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8
A pseudo-time integral method for non-isothermal viscoelastic ...
https://link.springer.com/article/10.1007/BF01333733
A pseudo-time integral scheme based on a finite streamline element method is developed to combine variable temperature with viscoelasticity.
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https://link.springer.com/article/10.1007/BF01333733
A pseudo-time integral scheme based on a finite streamline element method is developed to combine variable temperature with viscoelasticity.
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9
pseudo-transient continuation and differential-algebraic ...
https://repository.lib.ncsu.edu/bitstream/1840.4/540/1/crsc-tr02-18.pdf
Pseudo-transient continuation is a method for solving steady state solutions of partial differential equations, and is used when traditional line-search methods ...
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https://repository.lib.ncsu.edu/bitstream/1840.4/540/1/crsc-tr02-18.pdf
Pseudo-transient continuation is a method for solving steady state solutions of partial differential equations, and is used when traditional line-search methods ...
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10
Convergence Analysis of Pseudo-Transient Continuation - DTIC
https://apps.dtic.mil/sti/pdfs/ADA314613.pdf
As a method for integration in time, vPtc is a Rosenbrock method ([14], p. 223) if 8 is fixed. One may also think of this as a predictor-corrector method, ...
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https://apps.dtic.mil/sti/pdfs/ADA314613.pdf
As a method for integration in time, vPtc is a Rosenbrock method ([14], p. 223) if 8 is fixed. One may also think of this as a predictor-corrector method, ...
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11
Significance of pseudo time step in Ansys Fluent
https://forum.ansys.com/forums/topic/significance-of-pseudo-time-step-in-ansys-fluent/
pseudo time-stepping also known as pseudo-transient continuation, is the technique of solving the steady-state solution of time-evolving ...
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https://forum.ansys.com/forums/topic/significance-of-pseudo-time-step-in-ansys-fluent/
pseudo time-stepping also known as pseudo-transient continuation, is the technique of solving the steady-state solution of time-evolving ...
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12
Pseudo-Time Methods for Constrained Optimization Problems ...
https://ntrs.nasa.gov/api/citations/19950024699/downloads/19950024699.pdf
by S Taasan · 1995 · Cited by 41 —
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https://ntrs.nasa.gov/api/citations/19950024699/downloads/19950024699.pdf
by S Taasan · 1995 · Cited by 41 —
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13
Pseudo-time marching schemes for inverse problems ... - JSTOR
https://www.jstor.org/stable/24111964
without the need for an inversion of the system matrix. The PD approach, using both stochastic filtering and explicit time integration, has been applied in the ...
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https://www.jstor.org/stable/24111964
without the need for an inversion of the system matrix. The PD approach, using both stochastic filtering and explicit time integration, has been applied in the ...
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14
[CFD] Pseudo Transients for Steady-State CFD (Part 1)
https://www.youtube.com/watch?v=rF2t0-JmQZg
Fluid Mechanics 101
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https://www.youtube.com/watch?v=rF2t0-JmQZg
Fluid Mechanics 101
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15
Constrained pseudo-transient continuation for discontinuous ...
http://www-personal.umich.edu/~kfid/MYPUBS/Ceze_Fidkowski_2015.pdf
pressure) into pseudo-time marching steady-state solvers. ... away from non-physical states during the pseudo-transient integration, so as to prevent the ...
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http://www-personal.umich.edu/~kfid/MYPUBS/Ceze_Fidkowski_2015.pdf
pressure) into pseudo-time marching steady-state solvers. ... away from non-physical states during the pseudo-transient integration, so as to prevent the ...
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16
about pseudo time -- CFD Online Discussion Forums
https://www.cfd-online.com/Forums/main/3549-about-pseudo-time.html
about pseudo time · 1. After doing some mathematical manipulations, we obtain the. Navier-Stokes equations in a conservation form in curvilinear
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https://www.cfd-online.com/Forums/main/3549-about-pseudo-time.html
about pseudo time · 1. After doing some mathematical manipulations, we obtain the. Navier-Stokes equations in a conservation form in curvilinear
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17
Pseudo-transient Continuation Based Variable Relaxation ...
https://www.osti.gov/servlets/purl/969310
is an extension of integrating efficient linear elliptic solvers for ... solution with linear conductivity; Third, time step and relaxation factor are ...
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https://www.osti.gov/servlets/purl/969310
is an extension of integrating efficient linear elliptic solvers for ... solution with linear conductivity; Third, time step and relaxation factor are ...
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18
Pseudo-transient ghost fluid methods for the Poisson ...
http://szhao.people.ua.edu/uploads/9/0/8/4/90844682/amc20.pdf
two-component regularization, with an analytical integration of nonlinear term in pseudo- time solution. To ensure efficiency, both fully implicit ...
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http://szhao.people.ua.edu/uploads/9/0/8/4/90844682/amc20.pdf
two-component regularization, with an analytical integration of nonlinear term in pseudo- time solution. To ensure efficiency, both fully implicit ...
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19
Adaptive pseudo-time methods for the Poisson ... - DeepAI
https://deepai.org/publication/adaptive-pseudo-time-methods-for-the-poisson-boltzmann-equation-with-eulerian-solvent-excluded-surface
Moreover, this work explores, for the first time in the PBE literature, adaptive time integration techniques for the pseudo-transient ...
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https://deepai.org/publication/adaptive-pseudo-time-methods-for-the-poisson-boltzmann-equation-with-eulerian-solvent-excluded-surface
Moreover, this work explores, for the first time in the PBE literature, adaptive time integration techniques for the pseudo-transient ...
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20
Pseudo-time algorithms for the Navier-Stokes equations
https://www.academia.edu/26947855/Pseudo_time_algorithms_for_the_Navier_Stokes_equations
The algorithm is based on the time dependent streamfunction equation, with a Crank-Nicolson differencing scheme for the diffusion terms, and with an Adams- ...
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https://www.academia.edu/26947855/Pseudo_time_algorithms_for_the_Navier_Stokes_equations
The algorithm is based on the time dependent streamfunction equation, with a Crank-Nicolson differencing scheme for the diffusion terms, and with an Adams- ...
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21
Adaptive pseudo-time methods for the Poisson ... - arXiv
https://arxiv.org/pdf/2011.14250
Keywords: Poisson-Boltzmann equation; Pseudo-transient continuation; Molecular surface;. Adaptive time integration; Alternating direction ...
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https://arxiv.org/pdf/2011.14250
Keywords: Poisson-Boltzmann equation; Pseudo-transient continuation; Molecular surface;. Adaptive time integration; Alternating direction ...
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22
A New Method for Computing Pseudo-Time for Real Gas Flow ...
https://onepetro.org/JCPT/article/doi/10.2118/06-10-03/32260/A-New-Method-for-Computing-Pseudo-Time-for-Real
Accurate computations of pseudo-time allow one to use the solutions for fluids with constant compressibility and viscosity for modelling and ...
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https://onepetro.org/JCPT/article/doi/10.2118/06-10-03/32260/A-New-Method-for-Computing-Pseudo-Time-for-Real
Accurate computations of pseudo-time allow one to use the solutions for fluids with constant compressibility and viscosity for modelling and ...
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23
Advances in the Pseudo-Time Accurate Formulation of the ...
https://arc.aiaa.org/doi/pdf/10.2514/6.2020-3136
10 have demonstrated growing sensitivity error during the adjoint reverse time-integration due to partial convergence of the analysis problem at each implicit ...
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https://arc.aiaa.org/doi/pdf/10.2514/6.2020-3136
10 have demonstrated growing sensitivity error during the adjoint reverse time-integration due to partial convergence of the analysis problem at each implicit ...
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24
What is the pseudo transient method in CFD and how ... - Quora
https://www.quora.com/What-is-the-pseudo-transient-method-in-CFD-and-how-does-it-speed-up-convergence-in-steady-state-simulations
For steady-state simulations, the timescale or more precisely the time step used is actually the iteration step size. In other words, it reflects how ...
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https://www.quora.com/What-is-the-pseudo-transient-method-in-CFD-and-how-does-it-speed-up-convergence-in-steady-state-simulations
For steady-state simulations, the timescale or more precisely the time step used is actually the iteration step size. In other words, it reflects how ...
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25
Comparison of Pseudo-Spectral Algorithms for Field-Theoretic ...
https://web.math.ucsb.edu/~hdc/public/CompPseudoSpectralAlgo.pdf
schemes for chain contour integration and pseudo-time stepping methods in CL simulations. Finally, the nominal stability of the algorithms is examined for ...
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https://web.math.ucsb.edu/~hdc/public/CompPseudoSpectralAlgo.pdf
schemes for chain contour integration and pseudo-time stepping methods in CL simulations. Finally, the nominal stability of the algorithms is examined for ...
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26
An explicit pseudo-energy conserving time ... - hal-enpc
https://hal-enpc.archives-ouvertes.fr/hal-01661608v5
We propose a new explicit pseudo-energy and momentum conserving scheme for the time integration of Hamiltonian systems. The scheme, which is formally ...
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https://hal-enpc.archives-ouvertes.fr/hal-01661608v5
We propose a new explicit pseudo-energy and momentum conserving scheme for the time integration of Hamiltonian systems. The scheme, which is formally ...
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27
DOTS - Taylor & Francis Online
https://www.tandfonline.com/doi/pdf/10.1080/104077999275938
The Discrete Ordinates with Time Stepping DOTS numerical solution method for the ... pseudo-time iteration is employed, with simultaneous updating of all ...
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https://www.tandfonline.com/doi/pdf/10.1080/104077999275938
The Discrete Ordinates with Time Stepping DOTS numerical solution method for the ... pseudo-time iteration is employed, with simultaneous updating of all ...
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28
Chapter 10 Trajectory Analysis | Advanced Single-Cell ...
http://bioconductor.org/books/3.14/OSCA.advanced/trajectory-analysis.html
In trajectories describing time-dependent processes like differentiation, a cell's pseudotime value may be used as a proxy for its relative age, but only if ...
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http://bioconductor.org/books/3.14/OSCA.advanced/trajectory-analysis.html
In trajectories describing time-dependent processes like differentiation, a cell's pseudotime value may be used as a proxy for its relative age, but only if ...
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29
Locally adaptive pseudo-time stepping ... - ACM Digital Library
https://dl.acm.org/doi/abs/10.1016/j.jcp.2019.108913
This paper proposes a novel locally adaptive pseudo-time stepping convergence acceleration technique for dual time stepping which is a common ...
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https://dl.acm.org/doi/abs/10.1016/j.jcp.2019.108913
This paper proposes a novel locally adaptive pseudo-time stepping convergence acceleration technique for dual time stepping which is a common ...
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30
Single-cell RNA-seq pseudotime estimation algorithms - GitHub
https://github.com/agitter/single-cell-pseudotime
› agitter › single-cell-pseudotime
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https://github.com/agitter/single-cell-pseudotime
› agitter › single-cell-pseudotime
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31
Assessing the robustness and scalability of the ... - GMD
https://gmd.copernicus.org/articles/15/5757/2022/gmd-15-5757-2022.pdf
algorithms are concise and short as the explicit pseudo-time integration preserves similarity to the mathematical descrip-.
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https://gmd.copernicus.org/articles/15/5757/2022/gmd-15-5757-2022.pdf
algorithms are concise and short as the explicit pseudo-time integration preserves similarity to the mathematical descrip-.
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32
Pseudotime Simulates Disease Progression from Case ...
https://www.alzforum.org/news/conference-coverage/pseudotime-simulates-disease-progression-case-control-rna-seq
One way is pseudotime analysis. In essence, this algorithm orders cells on a virtual timeline based on the similarity of their ...
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https://www.alzforum.org/news/conference-coverage/pseudotime-simulates-disease-progression-case-control-rna-seq
One way is pseudotime analysis. In essence, this algorithm orders cells on a virtual timeline based on the similarity of their ...
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33
(110g) Pseudo-Transient Flowsheet Optimization Using Inertial ...
https://www.aiche.org/conferences/aiche-annual-meeting/2019/proceeding/paper/110g-pseudo-transient-flowsheet-optimization-using-inertial-manifolds
We demonstrate that PT simulation of the process flowsheet at each iteration can be substituted with a hybrid time integration/nonlinear algebraic solution ...
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https://www.aiche.org/conferences/aiche-annual-meeting/2019/proceeding/paper/110g-pseudo-transient-flowsheet-optimization-using-inertial-manifolds
We demonstrate that PT simulation of the process flowsheet at each iteration can be substituted with a hybrid time integration/nonlinear algebraic solution ...
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34
IMPLICIT AND SEMI-IMPLICIT SCHEMES: ALGORITHMS
https://ir.cwi.nl/pub/1250/1250D.pdf
)implicit time integration schemes now allow the most optimal combination of the explicit ... steady state solution by performing a 'pseudo-time stepping'.
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https://ir.cwi.nl/pub/1250/1250D.pdf
)implicit time integration schemes now allow the most optimal combination of the explicit ... steady state solution by performing a 'pseudo-time stepping'.
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35
pseudo transient continuation and time marching methods for ...
http://homepages.math.uic.edu/~awanou/MongePseudo17.pdf
second is a pure pseudo time marching method. The methods are proven to ... Using the divergence form of the determinant (2.5) and integration by parts, one.
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http://homepages.math.uic.edu/~awanou/MongePseudo17.pdf
second is a pure pseudo time marching method. The methods are proven to ... Using the divergence form of the determinant (2.5) and integration by parts, one.
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36
pseudotime - RNA-Seq Blog
https://www.rna-seqblog.com/tag/pseudotime/
Pseudotime analyses of single-cell RNA-seq data have become increasingly common. Typically, a latent trajectory corresponding to a biological process of ...
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https://www.rna-seqblog.com/tag/pseudotime/
Pseudotime analyses of single-cell RNA-seq data have become increasingly common. Typically, a latent trajectory corresponding to a biological process of ...
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37
Courant number in CFD simulations - IdealSimulations
https://www.idealsimulations.com/resources/courant-number-cfd/
In general, in transient and pseudo-transient approaches, the time step does not need to be constant. As the Courant number changes locally due to time, local ...
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https://www.idealsimulations.com/resources/courant-number-cfd/
In general, in transient and pseudo-transient approaches, the time step does not need to be constant. As the Courant number changes locally due to time, local ...
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38
Inference of high-resolution trajectories in single-cell RNA-seq ...
https://www.cell.com/cell-reports-methods/pdf/S2667-2375(21)00150-8.pdf
and the pseudotime of cells in each trajectory, which is needed ... pairs integration of adult-generated granule cells into dentate gyrus ...
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https://www.cell.com/cell-reports-methods/pdf/S2667-2375(21)00150-8.pdf
and the pseudotime of cells in each trajectory, which is needed ... pairs integration of adult-generated granule cells into dentate gyrus ...
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39
Pseudo-Transient Continuation for ... - SIAM Journals
https://epubs.siam.org/doi/pdf/10.1137/S0036142903431298
The iteration mimics a temporal integration scheme, with the time step being increased as steady state is approached. The iteration is an inexact Newton ...
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https://epubs.siam.org/doi/pdf/10.1137/S0036142903431298
The iteration mimics a temporal integration scheme, with the time step being increased as steady state is approached. The iteration is an inexact Newton ...
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40
A statistical framework for differential pseudotime analysis with ...
https://www.biorxiv.org/content/10.1101/2021.07.10.451910v1.full.pdf
Pseudotime analysis with single-cell RNA-sequencing (scRNA-seq) data has been ... (a) Using integrated and harmonized scRNA-seq data across ...
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https://www.biorxiv.org/content/10.1101/2021.07.10.451910v1.full.pdf
Pseudotime analysis with single-cell RNA-sequencing (scRNA-seq) data has been ... (a) Using integrated and harmonized scRNA-seq data across ...
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41
Benchmarking atlas-level data integration in single-cell ...
https://www.nature.com/articles/s41592-021-01336-8
This benchmarking study compares 16 methods for integrating complex ... the starting cells of the pre-integration diffusion pseudotime, ...
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https://www.nature.com/articles/s41592-021-01336-8
This benchmarking study compares 16 methods for integrating complex ... the starting cells of the pre-integration diffusion pseudotime, ...
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42
Chapter 17 Pseudotime analysis - single-cell RNA-seq analysis
https://bioinformatics-core-shared-training.github.io/CrukCiScRnaSeqMatDev/AnaWiSce/AnaCourse1/BookDownCourse1/pseudoTimeTop.html
... HCA data and perform integration, clustering and dimensionality reduction. Our aim is to extract T-cells from this dataset and proceed with pseudotime ...
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https://bioinformatics-core-shared-training.github.io/CrukCiScRnaSeqMatDev/AnaWiSce/AnaCourse1/BookDownCourse1/pseudoTimeTop.html
... HCA data and perform integration, clustering and dimensionality reduction. Our aim is to extract T-cells from this dataset and proceed with pseudotime ...
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43
Study on Pseudo.transient Analysis Methods for Solving ...
https://core.ac.uk/download/pdf/144446553.pdf
simulation are very wide, including microelectronics, integrated circuits, power ... 4.9 The time.step size of jge circuit by using the proposed restart ...
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https://core.ac.uk/download/pdf/144446553.pdf
simulation are very wide, including microelectronics, integrated circuits, power ... 4.9 The time.step size of jge circuit by using the proposed restart ...
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44
Fast Simulations of Pseudo-time Coupled Nonlinear ...
http://www.nimbios.org/SMB2012/pdfs/47_Shan_Zhao.pdf
Fast Simulations of Pseudo-time Coupled Nonlinear Biomolecular Solvation Systems ... is accomplished by the explicit Euler time integration and controlled.
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http://www.nimbios.org/SMB2012/pdfs/47_Shan_Zhao.pdf
Fast Simulations of Pseudo-time Coupled Nonlinear Biomolecular Solvation Systems ... is accomplished by the explicit Euler time integration and controlled.
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45
Locally adaptive pseudo-time stepping for high ... - NASA/ADS
https://ui.adsabs.harvard.edu/abs/2019JCoPh.39908913L/abstract
This paper proposes a novel locally adaptive pseudo-time stepping convergence acceleration technique for dual time stepping which is a common integration ...
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https://ui.adsabs.harvard.edu/abs/2019JCoPh.39908913L/abstract
This paper proposes a novel locally adaptive pseudo-time stepping convergence acceleration technique for dual time stepping which is a common integration ...
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46
Locally adaptive pseudo-time stepping for high ... - Scholars@TAMU
https://vivo.library.tamu.edu/vivo/display/n411913SE
Locally adaptive pseudo-time stepping for high-order Flux Reconstruction - Texas A&M University (TAMU) Scholar profile, educations, publications, research, ...
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https://vivo.library.tamu.edu/vivo/display/n411913SE
Locally adaptive pseudo-time stepping for high-order Flux Reconstruction - Texas A&M University (TAMU) Scholar profile, educations, publications, research, ...
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47
efficient time integration for Fourier pseudo‐spectral DNS of ...
https://repository.kaust.edu.sa/bitstream/10754/658659/1/Ketcheson_et_al-2019-International_Journal_for_Numerical_Methods_in_Fluids.pdf
TIME INTEGRATION OF FOURIER PSEUDO-SPECTRAL DNS. Direct numerical simulation (DNS) is a key tool in improving our understanding of turbulent flows.
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https://repository.kaust.edu.sa/bitstream/10754/658659/1/Ketcheson_et_al-2019-International_Journal_for_Numerical_Methods_in_Fluids.pdf
TIME INTEGRATION OF FOURIER PSEUDO-SPECTRAL DNS. Direct numerical simulation (DNS) is a key tool in improving our understanding of turbulent flows.
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48
Pseudo-time stepping methods for space–time discontinuous ...
http://staff.ustc.edu.cn/~yxu/JCP_Vol219_pp622-643_2006.pdf
Keywords: Compressible Navier–Stokes equations; Discontinuous Galerkin finite element methods; Pseudo-time integration; Implicit–.
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http://staff.ustc.edu.cn/~yxu/JCP_Vol219_pp622-643_2006.pdf
Keywords: Compressible Navier–Stokes equations; Discontinuous Galerkin finite element methods; Pseudo-time integration; Implicit–.
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49
Tutorials — Scanpy 1.9.1 documentation
https://scanpy.readthedocs.io/en/stable/tutorials.html
As a reference for simple pseudotime analyses, we provide the diffusion ... of reference data to new data: → tutorial: integrating-data-using-ingest.
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https://scanpy.readthedocs.io/en/stable/tutorials.html
As a reference for simple pseudotime analyses, we provide the diffusion ... of reference data to new data: → tutorial: integrating-data-using-ingest.
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50
Application of Adaptive Time-Stepping for Steady/Unsteady ...
https://www.iccfd.org/iccfd10/papers/ICCFD10-148-Paper.pdf
In this paper we demonstrate the usefulness of adaptive time-stepping based on ... as a series of pseudo-steady problems which is computationally expensive.
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https://www.iccfd.org/iccfd10/papers/ICCFD10-148-Paper.pdf
In this paper we demonstrate the usefulness of adaptive time-stepping based on ... as a series of pseudo-steady problems which is computationally expensive.
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51
Implicit time integration for pseudodynamic tests: Convergence and ...
https://www.semanticscholar.org/paper/Implicit-time-integration-for-pseudodynamic-tests%3A-Shing-Vannan/38e75122f6c20e52b2a7945a216d0071ad60d168
The convergence and energy-dissipation characteristics of an unconditionally stable implicit time integration scheme that has been adopted for pseudodynamic ...
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https://www.semanticscholar.org/paper/Implicit-time-integration-for-pseudodynamic-tests%3A-Shing-Vannan/38e75122f6c20e52b2a7945a216d0071ad60d168
The convergence and energy-dissipation characteristics of an unconditionally stable implicit time integration scheme that has been adopted for pseudodynamic ...
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52
Tempora: Cell trajectory inference using time-series single ...
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008205
The ordering problem, commonly termed pseudotime ordering if it is ... inference methods have been evaluated and integrated in Dyno, ...
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https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008205
The ordering problem, commonly termed pseudotime ordering if it is ... inference methods have been evaluated and integrated in Dyno, ...
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53
Pseudotime Analysis Reveals Exponential Trends in DNA ...
https://www.mdpi.com/2073-4409/11/5/767
We show that pseudotime analysis can be applied to DNA methylation in human ... Kobor, M.S. Integration of DNA Methylation Patterns and Genetic Variation in ...
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https://www.mdpi.com/2073-4409/11/5/767
We show that pseudotime analysis can be applied to DNA methylation in human ... Kobor, M.S. Integration of DNA Methylation Patterns and Genetic Variation in ...
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54
Using topological data analysis and pseudo time series to ...
https://bura.brunel.ac.uk/bitstream/2438/21317/1/FullText.pdf
PTS has also been used to integrate longitudinal studies with cross-sectional data [18]. In contrast to other unsupervised methods that provide in- tuitive and ...
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https://bura.brunel.ac.uk/bitstream/2438/21317/1/FullText.pdf
PTS has also been used to integrate longitudinal studies with cross-sectional data [18]. In contrast to other unsupervised methods that provide in- tuitive and ...
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55
Pseudotime estimation: deconfounding single cell time series
https://academic.oup.com/bioinformatics/article/32/19/2973/2196633
Pseudotime is a latent (unobserved) dimension which measures the cells' ... (2012) used GPs to model time series in a multiple dataset integration method.
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https://academic.oup.com/bioinformatics/article/32/19/2973/2196633
Pseudotime is a latent (unobserved) dimension which measures the cells' ... (2012) used GPs to model time series in a multiple dataset integration method.
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56
PseudotimeDE: inference of differential gene expression ...
https://escholarship.org/content/qt20d438mm/qt20d438mm.pdf?t=qtllxc
Pseudotime inference, also known as trajectory inference, is one of the most ... Another question is whether it is possible to integrate.
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https://escholarship.org/content/qt20d438mm/qt20d438mm.pdf?t=qtllxc
Pseudotime inference, also known as trajectory inference, is one of the most ... Another question is whether it is possible to integrate.
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57
Optimal Runge-Kutta Schemes for Pseudo Time-Stepping with ...
https://spectrum.library.concordia.ca/984983/1/Vermeire-2019.pdf
Please cite this article in press as: B.C. Vermeire et al., Optimal Runge-Kutta Schemes for Pseudo Time-Stepping with High-Order.
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https://spectrum.library.concordia.ca/984983/1/Vermeire-2019.pdf
Please cite this article in press as: B.C. Vermeire et al., Optimal Runge-Kutta Schemes for Pseudo Time-Stepping with High-Order.
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58
Refined explicit integration of elastoplastic models with ...
https://www.newcastle.edu.au/__data/assets/pdf_file/0006/22578/47_a_Refined-explicit-integration-of-elastoplastic-models-with-automatic-error-control.pdf
stresses and hardening parameter at the start of the pseudo time increment. 3. Explicit integration schemes. The substepping algorithms of Sloan (1987) ...
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https://www.newcastle.edu.au/__data/assets/pdf_file/0006/22578/47_a_Refined-explicit-integration-of-elastoplastic-models-with-automatic-error-control.pdf
stresses and hardening parameter at the start of the pseudo time increment. 3. Explicit integration schemes. The substepping algorithms of Sloan (1987) ...
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59
FLUID FLOWS AROUND TURBOMACHINERY USING AN ...
https://www.scipedia.com/wd/images/0/0d/Nigro_et_al_1995b_3047_nigro-storti-turbomach.pdf
method, explicit forward Euler pseudo-temporal time integration and periodic and absorbing boundary conditions, among other features.
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https://www.scipedia.com/wd/images/0/0d/Nigro_et_al_1995b_3047_nigro-storti-turbomach.pdf
method, explicit forward Euler pseudo-temporal time integration and periodic and absorbing boundary conditions, among other features.
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60
Pseudo-Temporal Analysis of Single-Cell RNA Sequencing ...
https://www.frontiersin.org/articles/10.3389/fnmol.2022.832813/full
› fnmol.2022.832813 › full
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https://www.frontiersin.org/articles/10.3389/fnmol.2022.832813/full
› fnmol.2022.832813 › full
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61
NUMERICAL SCHEME INFLUENCE ON PSEUDO DYNAMIC ...
https://www.iitk.ac.in/nicee/wcee/article/14_14-0214.PDF
structural analysis but the convenience of the chosen time-stepping ... KEYWORDS: Pseudo-dynamic tests, errors, numerical algorithms, non-linear systems.
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https://www.iitk.ac.in/nicee/wcee/article/14_14-0214.PDF
structural analysis but the convenience of the chosen time-stepping ... KEYWORDS: Pseudo-dynamic tests, errors, numerical algorithms, non-linear systems.
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62
Assessing the robustness and scalability of the accelerated ...
https://www.research-collection.ethz.ch/bitstream/handle/20.500.11850/560970/2/gmd-15-5757-2022.pdf
algorithms are concise and short as the explicit pseudo-time integration preserves similarity to the mathematical descrip-.
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https://www.research-collection.ethz.ch/bitstream/handle/20.500.11850/560970/2/gmd-15-5757-2022.pdf
algorithms are concise and short as the explicit pseudo-time integration preserves similarity to the mathematical descrip-.
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63
Modelling thermomechanical ice deformation using an implicit ...
https://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A23021/datastream/PDF/R%C3%A4ss-2020-Modelling_thermomechanical_ice_deformation_using-%28published_version%29.pdf
cretisation, and we implement the pseudo-time integration in a matrix-free way. We benchmark the mechanical Stokes.
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https://www.dora.lib4ri.ch/wsl/islandora/object/wsl%3A23021/datastream/PDF/R%C3%A4ss-2020-Modelling_thermomechanical_ice_deformation_using-%28published_version%29.pdf
cretisation, and we implement the pseudo-time integration in a matrix-free way. We benchmark the mechanical Stokes.
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64
Efficient adaptive pseudo-symplectic numerical integration ...
https://upcommons.upc.edu/bitstream/2117/364814/1/AIP%20Adv%202017.pdf
Numerical time integration schemes for Landau-Lifshitz magnetization dynamics are considered. Such dynamics preserves the magnetization amplitude and, ...
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https://upcommons.upc.edu/bitstream/2117/364814/1/AIP%20Adv%202017.pdf
Numerical time integration schemes for Landau-Lifshitz magnetization dynamics are considered. Such dynamics preserves the magnetization amplitude and, ...
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65
How to integrate multiple single cell RNA-seq samples and ...
https://www.biostars.org/p/442341/
Hi there,. I have 3 single cell RNA-seq samples and I would like to perform pseudotime analysis using Monocle2. I integrated these 3 samples ...
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https://www.biostars.org/p/442341/
Hi there,. I have 3 single cell RNA-seq samples and I would like to perform pseudotime analysis using Monocle2. I integrated these 3 samples ...
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66
Pseudo-spectral method - Wikipedia
https://en.wikipedia.org/wiki/Pseudo-spectral_method
Pseudo-spectral methods, also known as discrete variable representation (DVR) methods, are a class of numerical methods used in applied mathematics and ...
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https://en.wikipedia.org/wiki/Pseudo-spectral_method
Pseudo-spectral methods, also known as discrete variable representation (DVR) methods, are a class of numerical methods used in applied mathematics and ...
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67
An explicit pseudo-energy conserving ... - Papers With Code
https://paperswithcode.com/paper/an-explicit-pseudo-energy-conserving-time
The pseudo-energy conservation is established under exact force integration, whereas it is valid to second-order accuracy in the presence of ...
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https://paperswithcode.com/paper/an-explicit-pseudo-energy-conserving-time
The pseudo-energy conservation is established under exact force integration, whereas it is valid to second-order accuracy in the presence of ...
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68
AIRBUS QUANTUM COMPUTING CHALLENGE
https://www.airbus.com/sites/g/files/jlcbta136/files/2021-10/Airbus-Quantum-Computing-Challenge-PS2.pdf
of the equations so that their hyperbolic nature is kept (pseudo-time marching). It is therefore necessary to introduce a time integration scheme.
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https://www.airbus.com/sites/g/files/jlcbta136/files/2021-10/Airbus-Quantum-Computing-Challenge-PS2.pdf
of the equations so that their hyperbolic nature is kept (pseudo-time marching). It is therefore necessary to introduce a time integration scheme.
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69
Application of the momentum equations of motion to pseudo ...
https://royalsocietypublishing.org/doi/10.1098/rsta.2001.0874
The fourth advantage is that the detailed variation of resistance within each time–step will be thoroughly taken into account through the time integration of ...
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https://royalsocietypublishing.org/doi/10.1098/rsta.2001.0874
The fourth advantage is that the detailed variation of resistance within each time–step will be thoroughly taken into account through the time integration of ...
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70
The Pseudo-Time Arrow - Hacker News
https://news.ycombinator.com/item?id=18588338
If data could be recorded to infinite precision it would be possible to integrate the simulation back and forth between any two points in time ...
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https://news.ycombinator.com/item?id=18588338
If data could be recorded to infinite precision it would be possible to integrate the simulation back and forth between any two points in time ...
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71
Integration and transfer learning of single-cell transcriptomes ...
https://www.pnas.org/doi/full/10.1073/pnas.2024383118
The successful integration and transfer uncover the ... for downstream analyses such as pseudotime or differential gene expression analysis.
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https://www.pnas.org/doi/full/10.1073/pnas.2024383118
The successful integration and transfer uncover the ... for downstream analyses such as pseudotime or differential gene expression analysis.
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72
Still do not understand exactly what is pseudo transient ...
https://www.reddit.com/r/CFD/comments/yvwa2q/still_do_not_understand_exactly_what_is_pseudo/
Basically we compare the equation in an under-relaxed fashion to that of a implicit time integration and see that pseudo transient is ...
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https://www.reddit.com/r/CFD/comments/yvwa2q/still_do_not_understand_exactly_what_is_pseudo/
Basically we compare the equation in an under-relaxed fashion to that of a implicit time integration and see that pseudo transient is ...
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73
Concepts and limitations for learning developmental ...
https://journals.biologists.com/dev/article/146/12/dev170506/19458/Concepts-and-limitations-for-learning
The concepts of pseudotime and trajectory inference ... of experimental time, distinction of mRNA from precursor mRNA, and integration of ...
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https://journals.biologists.com/dev/article/146/12/dev170506/19458/Concepts-and-limitations-for-learning
The concepts of pseudotime and trajectory inference ... of experimental time, distinction of mRNA from precursor mRNA, and integration of ...
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74
ICASE |%OCT 1 7 1995 jj 'd
https://www.math.u-bordeaux.fr/~aiollo/Papers_files/1995%20Iollo.pdf
PSEUDO-TIME METHOD FOR OPTIMAL SHAPE. DESIGN USING THE EULER EQUATIONS. Angelo lollo. Geojoe Kuruvila. Shlomo Ta'asan. XBOTTON svwzr-j'.
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https://www.math.u-bordeaux.fr/~aiollo/Papers_files/1995%20Iollo.pdf
PSEUDO-TIME METHOD FOR OPTIMAL SHAPE. DESIGN USING THE EULER EQUATIONS. Angelo lollo. Geojoe Kuruvila. Shlomo Ta'asan. XBOTTON svwzr-j'.
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75
efficient time integration for Fourier pseudo-spectral DNS of ...
https://www.davidketcheson.info/assets/papers/2019_DNStime.pdf
1 Time integration of Fourier pseudo-spectral DNS. Direct numerical simulation (DNS) is a key tool in improving our understanding of ...
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https://www.davidketcheson.info/assets/papers/2019_DNStime.pdf
1 Time integration of Fourier pseudo-spectral DNS. Direct numerical simulation (DNS) is a key tool in improving our understanding of ...
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76
Modelling thermomechanical ice deformation using a GPU ...
https://d-nb.info/1194549764/34
discretisation, and we implement the pseudo-time integration in a matrix-free way. ... integrate the equation forward in pseudo-time τ until we reach the ...
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https://d-nb.info/1194549764/34
discretisation, and we implement the pseudo-time integration in a matrix-free way. ... integrate the equation forward in pseudo-time τ until we reach the ...
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77
The Pseudo-Transient Continuation Method for Solving ...
https://people.math.sc.edu/siamsc/old-website/seminar/Kelley/2006-04-18_Tim_abstract.pdf
... Pseudo-transient continuation is a method for finding dynamically stable solutions of nonlinear equations. The approach mimics temporal integration,.
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https://people.math.sc.edu/siamsc/old-website/seminar/Kelley/2006-04-18_Tim_abstract.pdf
... Pseudo-transient continuation is a method for finding dynamically stable solutions of nonlinear equations. The approach mimics temporal integration,.
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78
PseudotimeDE.pdf - Jingyi Jessica Li
http://jsb.ucla.edu/sites/default/files/publications/PseudotimeDE.pdf
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data.
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http://jsb.ucla.edu/sites/default/files/publications/PseudotimeDE.pdf
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data.
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79
Pseudo-time particle filtering for diffuse optical tomography
https://opg.optica.org/abstract.cfm?uri=josaa-28-10-2070
Here “time” is a pseudo variable, which helps us recursively integrate the ordinary differential equations (ODEs). The evolution of the artificial dynamics ...
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https://opg.optica.org/abstract.cfm?uri=josaa-28-10-2070
Here “time” is a pseudo variable, which helps us recursively integrate the ordinary differential equations (ODEs). The evolution of the artificial dynamics ...
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80
Pressure swing adsorption and simulated moving bed ... - Spiral
https://spiral.imperial.ac.uk/bitstream/10044/1/89354/2/aic.15987.pdf
by the pseudo-transient time integration, and the optimization solver only receives the objective function, constraints, and their gradients ...
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https://spiral.imperial.ac.uk/bitstream/10044/1/89354/2/aic.15987.pdf
by the pseudo-transient time integration, and the optimization solver only receives the objective function, constraints, and their gradients ...
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81
Parallel pseudo-transient Newton-Krylov-Schwarz ...
http://www.math.ncu.edu.tw/~hwangf/papers/anm_phinks.pdf
as a time integrator, at each time step, the resulting nonlinear system is solved by a fully parallel NKS algorithm, where inexact Newton ...
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http://www.math.ncu.edu.tw/~hwangf/papers/anm_phinks.pdf
as a time integrator, at each time step, the resulting nonlinear system is solved by a fully parallel NKS algorithm, where inexact Newton ...
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82
inference of differential gene expression along cell ...
https://av.tib.eu/en/media/54308
PseudotimeDE: inference of differential gene expression along cell pseudotime with ... Bayesian modeling and data integration in infectious disease ...
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https://av.tib.eu/en/media/54308
PseudotimeDE: inference of differential gene expression along cell pseudotime with ... Bayesian modeling and data integration in infectious disease ...
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83
on pseudoelliptic systems of first order - Project Euclid
https://projecteuclid.org/journals/nagoya-mathematical-journal/volume-108/issue-none/On-pseudoelliptic-systems-of-first-order-differential-equations/nmj/1118780826.pdf
transversally projective structure on the space of integral points I(P) ... pseudogroup 2ί(P) of a first order pseudoelliptic differential operator P(x,D).
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https://projecteuclid.org/journals/nagoya-mathematical-journal/volume-108/issue-none/On-pseudoelliptic-systems-of-first-order-differential-equations/nmj/1118780826.pdf
transversally projective structure on the space of integral points I(P) ... pseudogroup 2ί(P) of a first order pseudoelliptic differential operator P(x,D).
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84
What is a Data Flow Diagram - Lucidchart
https://www.lucidchart.com/pages/data-flow-diagram
... nowadays to visualizing interactive, real-time or database-oriented software or systems. ... DFD levels and layers: From context diagrams to pseudocode.
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https://www.lucidchart.com/pages/data-flow-diagram
... nowadays to visualizing interactive, real-time or database-oriented software or systems. ... DFD levels and layers: From context diagrams to pseudocode.
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85
Developer Guide | hCaptcha
https://docs.hcaptcha.com/
A complete list of known hCaptcha integrations is also available. ... into your CSP: asset subdomains used may vary over time or by region.
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https://docs.hcaptcha.com/
A complete list of known hCaptcha integrations is also available. ... into your CSP: asset subdomains used may vary over time or by region.
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86
Seurat subclustering - 10000bc.de
https://10000bc.de/seurat-subclustering.htm
The Seurat object of integrated data from ref. , 2015). 2) extracting the individual cell ... Pseudotime analysis was performed using Monocle (version 2. 8.
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https://10000bc.de/seurat-subclustering.htm
The Seurat object of integrated data from ref. , 2015). 2) extracting the individual cell ... Pseudotime analysis was performed using Monocle (version 2. 8.
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87
Big Bang Integration Testing - GeeksforGeeks
https://www.geeksforgeeks.org/big-bang-integration-testing/
What does 'Space Complexity' mean ? Pseudo-polynomial Algorithms · Polynomial Time Approximation Scheme · A Time Complexity Question. Interview ...
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https://www.geeksforgeeks.org/big-bang-integration-testing/
What does 'Space Complexity' mean ? Pseudo-polynomial Algorithms · Polynomial Time Approximation Scheme · A Time Complexity Question. Interview ...
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88
Time Parallel Time Integration - Université de Genève
https://www.unige.ch/~gander/poly.pdf
When solving time dependent partial differential equations, the time direction is usually not used for parallelization, because the time ...
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https://www.unige.ch/~gander/poly.pdf
When solving time dependent partial differential equations, the time direction is usually not used for parallelization, because the time ...
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89
Host Yourself - Web Fonts | Font Awesome Docs
https://fontawesome.com/docs/web/setup/host-yourself/webfonts
... any icon names in your project - we'll translate any older version icon names, style syntax, and CSS pseudo-element icon references automatically.
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https://fontawesome.com/docs/web/setup/host-yourself/webfonts
... any icon names in your project - we'll translate any older version icon names, style syntax, and CSS pseudo-element icon references automatically.
→ Check Latest Keyword Rankings ←
90
CLIP: Connecting Text and Images - OpenAI
https://openai.com/blog/clip/
› blog › clip
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https://openai.com/blog/clip/
› blog › clip
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91
Design Patterns - SourceMaking
https://sourcemaking.com/design_patterns
... well understood names for software interactions. Common design patterns can be improved over time, making them more robust than ad-hoc designs.
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https://sourcemaking.com/design_patterns
... well understood names for software interactions. Common design patterns can be improved over time, making them more robust than ad-hoc designs.
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92
gratings and homology theory
https://www.ams.org/bull/1947-53-03/S0002-9904-1947-08741-3/S0002-9904-1947-08741-3.pdf
With the aid of gratings, we shall be able to reformulate a variety of problems in topology, differential geometry, potential theory, and so on, in pseudo- ...
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https://www.ams.org/bull/1947-53-03/S0002-9904-1947-08741-3/S0002-9904-1947-08741-3.pdf
With the aid of gratings, we shall be able to reformulate a variety of problems in topology, differential geometry, potential theory, and so on, in pseudo- ...
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93
HTML Standard
https://html.spec.whatwg.org/
2.3.5.1 Months; 2.3.5.2 Dates; 2.3.5.3 Yearless dates; 2.3.5.4 Times; 2.3.5.5 Local dates ... 4.16.2 Case-sensitivity of selectors; 4.16.3 Pseudo-classes.
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https://html.spec.whatwg.org/
2.3.5.1 Months; 2.3.5.2 Dates; 2.3.5.3 Yearless dates; 2.3.5.4 Times; 2.3.5.5 Local dates ... 4.16.2 Case-sensitivity of selectors; 4.16.3 Pseudo-classes.
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