drjack.world
Google Keyword Rankings for : dn ds synonymous
1
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2596312/
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2596312/
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2
https://bioinformatics.cvr.ac.uk/calculating-dnds-for-ngs-datasets/
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https://bioinformatics.cvr.ac.uk/calculating-dnds-for-ngs-datasets/
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3
https://academic.oup.com/mbe/article/31/1/212/1049986
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https://academic.oup.com/mbe/article/31/1/212/1049986
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4
https://elifesciences.org/articles/48714
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https://elifesciences.org/articles/48714
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5
https://www.coursera.org/lecture/genetics-evolution/searching-for-natural-selection-dn-ds-s-6VocF
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https://www.coursera.org/lecture/genetics-evolution/searching-for-natural-selection-dn-ds-s-6VocF
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6
https://www.biorxiv.org/content/10.1101/2021.11.30.470556v1.full
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https://www.biorxiv.org/content/10.1101/2021.11.30.470556v1.full
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7
https://www.mathworks.com/help/bioinfo/ref/dnds.html
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https://www.mathworks.com/help/bioinfo/ref/dnds.html
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8
https://en.wikipedia.org/wiki/Ka/Ks_ratio
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https://en.wikipedia.org/wiki/Ka/Ks_ratio
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9
https://royalsocietypublishing.org/doi/pdf/10.1098/rsbl.2014.1031
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https://royalsocietypublishing.org/doi/pdf/10.1098/rsbl.2014.1031
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10
https://experiments.springernature.com/articles/10.1007/978-1-4939-1438-8_4
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https://experiments.springernature.com/articles/10.1007/978-1-4939-1438-8_4
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11
https://bmcecolevol.biomedcentral.com/articles/10.1186/1471-2148-12-8
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https://bmcecolevol.biomedcentral.com/articles/10.1186/1471-2148-12-8
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12
http://web.mit.edu/6.891/iap3.pdf
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http://web.mit.edu/6.891/iap3.pdf
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13
https://www.researchgate.net/publication/268231340_A_Beginners_Guide_to_Estimating_the_Non-synonymous_to_Synonymous_Rate_Ratio_of_all_Protein-Coding_Genes_in_a_Genome
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https://www.researchgate.net/publication/268231340_A_Beginners_Guide_to_Estimating_the_Non-synonymous_to_Synonymous_Rate_Ratio_of_all_Protein-Coding_Genes_in_a_Genome
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14
http://jakobssonlab.iob.uu.se/pdfs_Jakobssonlab/Wolf_etal_GBE_2009.pdf
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http://jakobssonlab.iob.uu.se/pdfs_Jakobssonlab/Wolf_etal_GBE_2009.pdf
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15
http://genetics.wustl.edu/bio5488/files/2016/04/Molecular_evolution2016.pdf
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http://genetics.wustl.edu/bio5488/files/2016/04/Molecular_evolution2016.pdf
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16
https://rpubs.com/cole3136/252403
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https://rpubs.com/cole3136/252403
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17
https://genominfo.org/upload/pdf/gi-20058.pdf
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https://genominfo.org/upload/pdf/gi-20058.pdf
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18
http://abacus.gene.ucl.ac.uk/ziheng/pdf/2013dosReisYangGeneticsv195p195.pdf
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http://abacus.gene.ucl.ac.uk/ziheng/pdf/2013dosReisYangGeneticsv195p195.pdf
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19
https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/synonymous-substitution
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https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/synonymous-substitution
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20
https://github.com/im3sanger/dndscv/issues/19
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https://github.com/im3sanger/dndscv/issues/19
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21
https://phac-nml.github.io/quasitools/dnds/
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https://phac-nml.github.io/quasitools/dnds/
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22
https://www.frontiersin.org/articles/10.3389/fgene.2017.00074/full
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https://www.frontiersin.org/articles/10.3389/fgene.2017.00074/full
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23
http://www.biologyaspoetry.com/terms/dn_ds.html
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http://www.biologyaspoetry.com/terms/dn_ds.html
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24
https://biojulia.net/NaturalSelection.jl/v0.2.0/man/dNdS.html
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https://biojulia.net/NaturalSelection.jl/v0.2.0/man/dNdS.html
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25
https://hyphy.org/resources/slides-selection-2016.pdf
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https://hyphy.org/resources/slides-selection-2016.pdf
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26
https://bio-protocol.org/bio101/r8621458
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https://bio-protocol.org/bio101/r8621458
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27
https://www.semanticscholar.org/paper/Comparisons-of-dN%2FdS-are-time-dependent-for-closely-Rocha-Smith/93103f608a579c04de42985cce446f302280a0f3
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https://www.semanticscholar.org/paper/Comparisons-of-dN%2FdS-are-time-dependent-for-closely-Rocha-Smith/93103f608a579c04de42985cce446f302280a0f3
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28
https://www.diva-portal.org/smash/get/diva2:1416990/FULLTEXT01.pdf
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https://www.diva-portal.org/smash/get/diva2:1416990/FULLTEXT01.pdf
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29
https://research.fredhutch.org/content/dam/stripe/bloom/labfiles/publications/Bloom2017.pdf
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https://research.fredhutch.org/content/dam/stripe/bloom/labfiles/publications/Bloom2017.pdf
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30
https://search.r-project.org/CRAN/refmans/seqinr/html/kaks.html
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https://search.r-project.org/CRAN/refmans/seqinr/html/kaks.html
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31
https://www.youtube.com/watch?v=vwmuvcDh9ZM
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https://www.youtube.com/watch?v=vwmuvcDh9ZM
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32
http://www.lifesci.susx.ac.uk/home/Adam_Eyre-Walker/Website/Publications_files/StoletzkiMBE11-omega.pdf
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http://www.lifesci.susx.ac.uk/home/Adam_Eyre-Walker/Website/Publications_files/StoletzkiMBE11-omega.pdf
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33
https://www.zoology.ubc.ca/~otto/veg/Readings/cheng2021molecular.pdf
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https://www.zoology.ubc.ca/~otto/veg/Readings/cheng2021molecular.pdf
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34
https://faculty.washington.edu/wjs18/dnds.ppt
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https://faculty.washington.edu/wjs18/dnds.ppt
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35
https://biology.stackexchange.com/questions/86454/who-invented-dn-ds
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https://biology.stackexchange.com/questions/86454/who-invented-dn-ds
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36
https://genome.cshlp.org/content/28/7/975.full.pdf
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https://genome.cshlp.org/content/28/7/975.full.pdf
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37
https://bioinformaticsreview.com/20190323/how-to-calculate-dn-ds-and-dn-ds-ratio-on-a-set-of-genes-using-mega/
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https://bioinformaticsreview.com/20190323/how-to-calculate-dn-ds-and-dn-ds-ratio-on-a-set-of-genes-using-mega/
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38
https://drummondlab.org/assets/pdfs/DrummondWilke2008-Supplemental.pdf
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https://drummondlab.org/assets/pdfs/DrummondWilke2008-Supplemental.pdf
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39
https://www.mdpi.com/2073-4425/13/6/1090/htm
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https://www.mdpi.com/2073-4425/13/6/1090/htm
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40
https://www.megasoftware.net/mega4/m_test_select.html
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https://www.megasoftware.net/mega4/m_test_select.html
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41
https://plos.figshare.com/articles/dataset/_The_estimation_selection_in_7_housekeeping_gene_using_the_non_synonymous_to_synonymous_amino_acid_substitution_ratio_dN_dS_in_this_study_/1527137/1
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https://plos.figshare.com/articles/dataset/_The_estimation_selection_in_7_housekeeping_gene_using_the_non_synonymous_to_synonymous_amino_acid_substitution_ratio_dN_dS_in_this_study_/1527137/1
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42
https://www.science.org/doi/pdf/10.1126/sciadv.aaw3307
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https://www.science.org/doi/pdf/10.1126/sciadv.aaw3307
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43
https://elischolar.library.yale.edu/cgi/viewcontent.cgi?article=3931&context=ymtdl
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https://elischolar.library.yale.edu/cgi/viewcontent.cgi?article=3931&context=ymtdl
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44
https://dash.harvard.edu/bitstream/handle/1/13454696/4224349.pdf?sequence=1&isAllowed=y
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https://dash.harvard.edu/bitstream/handle/1/13454696/4224349.pdf?sequence=1&isAllowed=y
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45
https://www.cell.com/current-biology/pdf/S0960-9822(02)01432-X.pdf
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https://www.cell.com/current-biology/pdf/S0960-9822(02)01432-X.pdf
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46
http://classic.datamonkey.org/help/tutorial.pdf
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http://classic.datamonkey.org/help/tutorial.pdf
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47
https://research.pasteur.fr/en/publication/comparisons-of-dnds-are-time-dependent-for-closely-related-bacterial-genomes/
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https://research.pasteur.fr/en/publication/comparisons-of-dnds-are-time-dependent-for-closely-related-bacterial-genomes/
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48
https://www.nature.com/articles/s41586-021-04269-6
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https://www.nature.com/articles/s41586-021-04269-6
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49
https://www.biostars.org/p/5817/
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https://www.biostars.org/p/5817/
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50
https://fasta.bioch.virginia.edu/biol4230/lects/biol4230_18_selection.pdf
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https://fasta.bioch.virginia.edu/biol4230/lects/biol4230_18_selection.pdf
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51
http://services.cbu.uib.no/tools/kaks
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http://services.cbu.uib.no/tools/kaks
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52
http://www.cs.cmu.edu/~epxing/CBML/evo_selection/yang929.pdf
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http://www.cs.cmu.edu/~epxing/CBML/evo_selection/yang929.pdf
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53
https://anvio.org/help/main/programs/anvi-get-pn-ps-ratio/
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https://anvio.org/help/main/programs/anvi-get-pn-ps-ratio/
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54
https://digital.csic.es/bitstream/10261/219515/1/2020%20Mol%20Biol%20Evol%2037-2450.pdf
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https://digital.csic.es/bitstream/10261/219515/1/2020%20Mol%20Biol%20Evol%2037-2450.pdf
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55
https://www.sanger.ac.uk/tool/dndscv/
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https://www.sanger.ac.uk/tool/dndscv/
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56
https://www.csb.pitt.edu/ComputationalGenomics/Lectures/Lec6.pdf
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https://www.csb.pitt.edu/ComputationalGenomics/Lectures/Lec6.pdf
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57
https://canvas.brown.edu/courses/991111/files/53326415/download?verifier=Wvj6mZvY3Pp1ATMT3gqFxADfMFS6vrvlIPXAvwdC&wrap=1
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https://canvas.brown.edu/courses/991111/files/53326415/download?verifier=Wvj6mZvY3Pp1ATMT3gqFxADfMFS6vrvlIPXAvwdC&wrap=1
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58
https://www.jstor.org/stable/27756354
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https://www.jstor.org/stable/27756354
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59
https://www.reddit.com/r/bioinformatics/comments/mtfdro/calculating_kaks_dnds_ratio_recommendations/
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https://www.reddit.com/r/bioinformatics/comments/mtfdro/calculating_kaks_dnds_ratio_recommendations/
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60
https://escholarship.org/content/qt6575v2jn/qt6575v2jn_noSplash_e67d3cc90b1570440176f824e6ea2580.pdf
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https://escholarship.org/content/qt6575v2jn/qt6575v2jn_noSplash_e67d3cc90b1570440176f824e6ea2580.pdf
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61
https://s-space.snu.ac.kr/handle/10371/125812
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https://s-space.snu.ac.kr/handle/10371/125812
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62
https://wall-lab.stanford.edu/docs/dpwall_2005_5.pdf
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https://wall-lab.stanford.edu/docs/dpwall_2005_5.pdf
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63
https://aasldpubs.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/lt.20206
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https://aasldpubs.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/lt.20206
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64
https://rdrr.io/cran/seqinr/man/kaks.html
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https://rdrr.io/cran/seqinr/man/kaks.html
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65
http://pbil.univ-lyon1.fr/members/duret/publications/PDF/2018-Gueguen-MBE.pdf
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http://pbil.univ-lyon1.fr/members/duret/publications/PDF/2018-Gueguen-MBE.pdf
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66
https://www.molecularecologist.com/2015/02/26/dneutralist-dselectionist-part-1/
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https://www.molecularecologist.com/2015/02/26/dneutralist-dselectionist-part-1/
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67
https://datadryad.org/stash/dataset/doi:10.5061/dryad.51sq0
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https://datadryad.org/stash/dataset/doi:10.5061/dryad.51sq0
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68
https://www.jstage.jst.go.jp/article/ggs/86/2/86_2_123/_pdf
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https://www.jstage.jst.go.jp/article/ggs/86/2/86_2_123/_pdf
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69
https://www.numerade.com/ask/question/3-calculate-the-frequency-of-nonsynonymous-versus-synonymous-substitutions-for-the-following-sequences-dnds-use-the-approach-presented-in-lecture-remember-to-consider-the-potential-number-of-03776/
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https://www.numerade.com/ask/question/3-calculate-the-frequency-of-nonsynonymous-versus-synonymous-substitutions-for-the-following-sequences-dnds-use-the-approach-presented-in-lecture-remember-to-consider-the-potential-number-of-03776/
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70
https://video.ucdavis.edu/media/17_EVE100_Lecture17/1_lx5jqbky
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https://video.ucdavis.edu/media/17_EVE100_Lecture17/1_lx5jqbky
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71
https://www.chegg.com/homework-help/questions-and-answers/calculate-interpret-dn-ds-mk-following-sequences-simplicity-assume-first-second-codon-posi-q27701126
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https://www.chegg.com/homework-help/questions-and-answers/calculate-interpret-dn-ds-mk-following-sequences-simplicity-assume-first-second-codon-posi-q27701126
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72
https://people.bu.edu/msoren/BI515_2014/LectureCh9A.pdf
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https://people.bu.edu/msoren/BI515_2014/LectureCh9A.pdf
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73
https://journals.sagepub.com/doi/pdf/10.4137/EBO.S11930
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https://journals.sagepub.com/doi/pdf/10.4137/EBO.S11930
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74
https://yourgene.pixnet.net/blog/post/117099746-%E6%97%8F%E7%BE%A4%E6%BC%94%E5%8C%96%E7%A0%94%E7%A9%B6%EF%BC%9A%E5%88%A9%E7%94%A8dn-ds-ratio%E8%A7%80%E5%AF%9F%E5%A4%A9%E6%93%87%E4%BD%9C%E7%94%A8
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https://yourgene.pixnet.net/blog/post/117099746-%E6%97%8F%E7%BE%A4%E6%BC%94%E5%8C%96%E7%A0%94%E7%A9%B6%EF%BC%9A%E5%88%A9%E7%94%A8dn-ds-ratio%E8%A7%80%E5%AF%9F%E5%A4%A9%E6%93%87%E4%BD%9C%E7%94%A8
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75
https://slideplayer.com/slide/8287019/
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https://slideplayer.com/slide/8287019/
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76
http://www.iro.umontreal.ca/~dift3295/demos/demo8_A19_pres.pdf
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http://www.iro.umontreal.ca/~dift3295/demos/demo8_A19_pres.pdf
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77
https://books.google.com/books?id=T-LoAwAAQBAJ&pg=PA61&lpg=PA61&dq=dn+ds+synonymous&source=bl&ots=UFKesdOBa0&sig=ACfU3U1fWsbWPDNRWFZNVTqUSr7s76tDmQ&hl=en&sa=X&ved=2ahUKEwjV9JaB3s_7AhXuRKQEHWffCF8Q6AF6BAg1EAM
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https://books.google.com/books?id=T-LoAwAAQBAJ&pg=PA61&lpg=PA61&dq=dn+ds+synonymous&source=bl&ots=UFKesdOBa0&sig=ACfU3U1fWsbWPDNRWFZNVTqUSr7s76tDmQ&hl=en&sa=X&ved=2ahUKEwjV9JaB3s_7AhXuRKQEHWffCF8Q6AF6BAg1EAM
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78
https://www.kenrockwell.com/tech/00-new-today.htm
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https://www.kenrockwell.com/tech/00-new-today.htm
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79
https://books.google.com/books?id=WKDFCgAAQBAJ&pg=PA215&lpg=PA215&dq=dn+ds+synonymous&source=bl&ots=7Vovp3jQ9i&sig=ACfU3U0fS4rhtIi5oMlRlyZnP9o2UilxuA&hl=en&sa=X&ved=2ahUKEwjV9JaB3s_7AhXuRKQEHWffCF8Q6AF6BAgpEAM
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https://books.google.com/books?id=WKDFCgAAQBAJ&pg=PA215&lpg=PA215&dq=dn+ds+synonymous&source=bl&ots=7Vovp3jQ9i&sig=ACfU3U0fS4rhtIi5oMlRlyZnP9o2UilxuA&hl=en&sa=X&ved=2ahUKEwjV9JaB3s_7AhXuRKQEHWffCF8Q6AF6BAgpEAM
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80
https://books.google.com/books?id=LG_NDwAAQBAJ&pg=PA268&lpg=PA268&dq=dn+ds+synonymous&source=bl&ots=Rsp3mtUE8B&sig=ACfU3U0tcdnkdJvDgibzTRoW8KhALuFEJQ&hl=en&sa=X&ved=2ahUKEwjV9JaB3s_7AhXuRKQEHWffCF8Q6AF6BAgwEAM
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https://books.google.com/books?id=LG_NDwAAQBAJ&pg=PA268&lpg=PA268&dq=dn+ds+synonymous&source=bl&ots=Rsp3mtUE8B&sig=ACfU3U0tcdnkdJvDgibzTRoW8KhALuFEJQ&hl=en&sa=X&ved=2ahUKEwjV9JaB3s_7AhXuRKQEHWffCF8Q6AF6BAgwEAM
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81
https://books.google.com/books?id=DeD_lQ-kBPQC&pg=PA479&lpg=PA479&dq=dn+ds+synonymous&source=bl&ots=O3XG4aMwaP&sig=ACfU3U1olaH1n3D-uJyZxswx0LtsDufRrw&hl=en&sa=X&ved=2ahUKEwjV9JaB3s_7AhXuRKQEHWffCF8Q6AF6BAgsEAM
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82
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83
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84
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