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Google Keyword Rankings for : filtering fastq file
1
A fast FASTQ filter program. - GitHub
https://github.com/LUMC/fastq-filter
fastq-filter. A fast FASTQ filter program. Fastq-filter correctly takes into account that quality scores are log scores when calculating the mean.
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https://github.com/LUMC/fastq-filter
fastq-filter. A fast FASTQ filter program. Fastq-filter correctly takes into account that quality scores are log scores when calculating the mean.
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2
FastqCleaner: an interactive Bioconductor application for ...
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2961-8
Here we present FastqCleaner, an R package with an offline-capable web application for QC, trimming and filtering of FASTQ files. The tool ...
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https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2961-8
Here we present FastqCleaner, an R package with an offline-capable web application for QC, trimming and filtering of FASTQ files. The tool ...
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3
fastqFilter: Filter and trim a fastq file. in benjjneb/dada2 - Rdrr.io
https://rdrr.io/github/benjjneb/dada2/man/fastqFilter.html
fastqFilter takes an input fastq file (can be compressed), filters it based on several user-definable criteria, and outputs those reads ...
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https://rdrr.io/github/benjjneb/dada2/man/fastqFilter.html
fastqFilter takes an input fastq file (can be compressed), filters it based on several user-definable criteria, and outputs those reads ...
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4
7.3 Filtering and trimming reads | Computational Genomics ...
https://compgenomr.github.io/book/filtering-and-trimming-reads.html
Below we will first set up the file paths to fastq files and filter them based on their length and whether or not they contain the “N” character, which stands ...
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https://compgenomr.github.io/book/filtering-and-trimming-reads.html
Below we will first set up the file paths to fastq files and filter them based on their length and whether or not they contain the “N” character, which stands ...
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5
Trimming and Filtering a FASTQ — HTS2018 1.0 documentation
https://people.duke.edu/~ccc14/duke-hts-2018/bioinformatics/fastq_trimming.html
We will use fastq-mcf to trim adapter from our reads and do some quality ... Now we need to make the adapter file; this needs to be in FASTA format.
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https://people.duke.edu/~ccc14/duke-hts-2018/bioinformatics/fastq_trimming.html
We will use fastq-mcf to trim adapter from our reads and do some quality ... Now we need to make the adapter file; this needs to be in FASTA format.
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6
Trimming and Filtering - Data Carpentry
https://datacarpentry.org/wrangling-genomics/03-trimming/
We will use a program called Trimmomatic to filter poor quality reads and ... SRR_1056_1un.trimmed.fastq, the output file for orphaned reads from the _1 ...
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https://datacarpentry.org/wrangling-genomics/03-trimming/
We will use a program called Trimmomatic to filter poor quality reads and ... SRR_1056_1un.trimmed.fastq, the output file for orphaned reads from the _1 ...
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7
fastq_filter command - drive5
https://www.drive5.com/usearch/manual/cmd_fastq_filter.html
Performs quality filtering and / or conversion of a FASTQ file to FASTA format. ... Paper describing expected error filtering and paired read merging (Edgar & ...
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https://www.drive5.com/usearch/manual/cmd_fastq_filter.html
Performs quality filtering and / or conversion of a FASTQ file to FASTA format. ... Paper describing expected error filtering and paired read merging (Edgar & ...
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8
Human sequence read filtering from fastq files - QIIME2 docs
https://docs.qiime2.org/jupyterbooks/cancer-microbiome-intervention-tutorial/040-appendices/human-read-fastq-filter.html
This notebook applies a human read filter to a directory of fastq files and outputs new fastq files that exclude any sequences that had matches to the human ...
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https://docs.qiime2.org/jupyterbooks/cancer-microbiome-intervention-tutorial/040-appendices/human-read-fastq-filter.html
This notebook applies a human read filter to a directory of fastq files and outputs new fastq files that exclude any sequences that had matches to the human ...
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9
Filtering FASTQ file based on read names from other file (how ...
https://codereview.stackexchange.com/questions/256943/filtering-fastq-file-based-on-read-names-from-other-file-how-to-increase-perfor
Do not reinvent the wheel. There are bioinformatics tools that accomplish this task. To extract reads from fastq files by IDs, ...
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https://codereview.stackexchange.com/questions/256943/filtering-fastq-file-based-on-read-names-from-other-file-how-to-increase-perfor
Do not reinvent the wheel. There are bioinformatics tools that accomplish this task. To extract reads from fastq files by IDs, ...
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10
2. Quality filtering of reads - Paleogenomics
https://paleogenomics-course.readthedocs.io/en/latest/2_ReadsFiltering.html
The first step is the quality-control of the reads generated by the sequencing platform in the fastq file format. To do that, we will use FastQC, ...
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https://paleogenomics-course.readthedocs.io/en/latest/2_ReadsFiltering.html
The first step is the quality-control of the reads generated by the sequencing platform in the fastq file format. To do that, we will use FastQC, ...
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11
Remove too short reads from fastq files - Metagenomics
https://www.metagenomics.wiki/tools/short-read/filter-remove-too-short-reads-length
Remove too short reads from fastq files. Full genome shotgun sequencing. Filtering fastq sequences based on read lengths. using usearch7.
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https://www.metagenomics.wiki/tools/short-read/filter-remove-too-short-reads-length
Remove too short reads from fastq files. Full genome shotgun sequencing. Filtering fastq sequences based on read lengths. using usearch7.
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12
Filter reads for several criteria with PRINSEQ - Chipster
https://chipster.csc.fi/manual/prinseq-filter.html
Description. This tool filters reads for several criteria such as length, low complexity, Ns and duplicates. The input data can be in FASTQ or FASTA format ...
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https://chipster.csc.fi/manual/prinseq-filter.html
Description. This tool filters reads for several criteria such as length, low complexity, Ns and duplicates. The input data can be in FASTQ or FASTA format ...
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13
Filtering Fastq File According To Qual Score - Galaxy Help
https://biostar.galaxyproject.org/p/2957/index.html
Hi Haluk, By filtering, you mean removing reads? trimming their ends? or masking some of their bases? There are 3 tools under "Generic FASTQ manipulation" ...
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https://biostar.galaxyproject.org/p/2957/index.html
Hi Haluk, By filtering, you mean removing reads? trimming their ends? or masking some of their bases? There are 3 tools under "Generic FASTQ manipulation" ...
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14
Illumina Fastq Filtering - Protocols.io
https://www.protocols.io/view/illumina-fastq-filtering-gydbxs6
Method to filter Illumina sequence data by removing low quality reads and ... Use clumpify to reorder the reads in the fastq file so that similar reads are ...
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https://www.protocols.io/view/illumina-fastq-filtering-gydbxs6
Method to filter Illumina sequence data by removing low quality reads and ... Use clumpify to reorder the reads in the fastq file so that similar reads are ...
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15
How to filter out host reads from paired-end fastq files? - BOL
https://bioinformaticsonline.com/answers/view/41588/how-to-filter-out-host-reads-from-paired-end-fastq-files
How to filter out host reads from paired-end fastq files? Answers. 0. a) bowtie2 mapping against host sequence. Host example: ...
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https://bioinformaticsonline.com/answers/view/41588/how-to-filter-out-host-reads-from-paired-end-fastq-files
How to filter out host reads from paired-end fastq files? Answers. 0. a) bowtie2 mapping against host sequence. Host example: ...
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16
FastqCleaner.pdf - Bioconductor
https://bioconductor.org/packages/release/bioc/manuals/FastqCleaner/man/FastqCleaner.pdf
FastqCleaner: A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files. R package version 1.16.1. Installation. To install this package, ...
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https://bioconductor.org/packages/release/bioc/manuals/FastqCleaner/man/FastqCleaner.pdf
FastqCleaner: A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files. R package version 1.16.1. Installation. To install this package, ...
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17
CASAVA FASTQ Filter - Unipro UGENE User Manual - WIKI
https://doc.ugene.net/wiki/display/UM/CASAVA+FASTQ+Filter
Reads in FASTQ file produced by CASAVA 1.8 contain 'N' or 'Y' as a part of an idetifier. 'Y' if a read if filtered, 'N' if the read if the ...
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https://doc.ugene.net/wiki/display/UM/CASAVA+FASTQ+Filter
Reads in FASTQ file produced by CASAVA 1.8 contain 'N' or 'Y' as a part of an idetifier. 'Y' if a read if filtered, 'N' if the read if the ...
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18
fastqutils :: filter - NGSUtils
https://ngsutils.org/modules/fastqutils/filter/
fastqutils / filter. Filter reads in a FASTQ file. The filtering criteria can be applied as a batch, allowing you to use more than one criterion at a time.
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https://ngsutils.org/modules/fastqutils/filter/
fastqutils / filter. Filter reads in a FASTQ file. The filtering criteria can be applied as a batch, allowing you to use more than one criterion at a time.
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19
FASTQ files explained - Support Illumina
https://support.illumina.com/bulletins/2016/04/fastq-files-explained.html
This process is called BCL to FASTQ conversion. A FASTQ file is a text file that contains the sequence data from the clusters that pass filter on a flow cell ( ...
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https://support.illumina.com/bulletins/2016/04/fastq-files-explained.html
This process is called BCL to FASTQ conversion. A FASTQ file is a text file that contains the sequence data from the clusters that pass filter on a flow cell ( ...
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20
Filtering a dataset - BlobToolKit
https://blobtoolkit.genomehubs.org/blobtools2/blobtools2-tutorials/filtering-a-dataset/
Filters may be applied to a complete dataset to allow for use of a reduced dataset without repeating analyses or applied to assembly FASTA and read FASTQ files ...
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https://blobtoolkit.genomehubs.org/blobtools2/blobtools2-tutorials/filtering-a-dataset/
Filters may be applied to a complete dataset to allow for use of a reduced dataset without repeating analyses or applied to assembly FASTA and read FASTQ files ...
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21
FASTQ Preprocessing - Blast2GO
http://docs.blast2go.com/user-manual/tools-(pro-feature)/fastq-preprocessing
Preprocessing FASTQ files in Blast2GO consists of removing adapters and contamination sequences, trimming low quality bases and filtering short and low ...
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http://docs.blast2go.com/user-manual/tools-(pro-feature)/fastq-preprocessing
Preprocessing FASTQ files in Blast2GO consists of removing adapters and contamination sequences, trimming low quality bases and filtering short and low ...
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22
FastQ Screen 0.14.0 documentation - Babraham Bioinformatics
https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/_build/html/index.html
Filtering FastQ Files¶. You may want to filter your data to remove reads mapping to a certain species. With FastQ Screen it is possible to generate a new FASTQ ...
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https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/_build/html/index.html
Filtering FastQ Files¶. You may want to filter your data to remove reads mapping to a certain species. With FastQ Screen it is possible to generate a new FASTQ ...
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23
Preprocessing FastQ Data — NGLess 1.5.0 documentation
https://ngless.embl.de/preprocess.html
Preprocessing FastQ files consists of quality trimming and filtering of reads as well as (possible) elimination of reads which match some reference which is ...
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https://ngless.embl.de/preprocess.html
Preprocessing FastQ files consists of quality trimming and filtering of reads as well as (possible) elimination of reads which match some reference which is ...
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24
Filter multiple fastq files with FASTP - Junli Zhang's Blog
https://junli.netlify.app/apps/filter-multiple-fastq-files-with-fastp/
Filter multiple fastq files with FASTP. FASTP is a tool designed to provide fast all-in-one preprocessing for FastQ files. Please check out the fastp github ...
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https://junli.netlify.app/apps/filter-multiple-fastq-files-with-fastp/
Filter multiple fastq files with FASTP. FASTP is a tool designed to provide fast all-in-one preprocessing for FastQ files. Please check out the fastp github ...
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25
MEEPTOOLS: A maximum expected error based FASTQ read ...
https://arxiv.org/pdf/1512.03344
sequencing data in FASTQ file format. MEEPTOOLS provides a non-traditional approach towards read filtering/trimming based on maximum error probabilities of ...
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https://arxiv.org/pdf/1512.03344
sequencing data in FASTQ file format. MEEPTOOLS provides a non-traditional approach towards read filtering/trimming based on maximum error probabilities of ...
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26
How to filter out fastq files from a group of ... - Stack Overflow
https://stackoverflow.com/questions/72996754/how-to-filter-out-fastq-files-from-a-group-of-fastq-files-based-on-read-count-in
I can only find information on filtering reads from files yet I need to filter files based on the number of reads contained in them.
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https://stackoverflow.com/questions/72996754/how-to-filter-out-fastq-files-from-a-group-of-fastq-files-based-on-read-count-in
I can only find information on filtering reads from files yet I need to filter files based on the number of reads contained in them.
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27
fastqFilter: Filter and trim a fastq file. - RDocumentation
https://www.rdocumentation.org/packages/dada2/versions/1.0.3/topics/fastqFilter
fastqFilter takes an input fastq file (can be compressed), filters it based on several user-definable criteria, and outputs those reads which pass the ...
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https://www.rdocumentation.org/packages/dada2/versions/1.0.3/topics/fastqFilter
fastqFilter takes an input fastq file (can be compressed), filters it based on several user-definable criteria, and outputs those reads which pass the ...
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28
Trimming and Filtering Data — RNA-Seq analysis of Mouse ...
https://cyverse-leptin-rna-seq-lesson-dev.readthedocs-hosted.com/en/latest/section-7.html
Remember, as FastQ file may contain perhaps millions of individual sequencing reads. When you use Trimmomatic, you will usually use a quality report (like ...
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https://cyverse-leptin-rna-seq-lesson-dev.readthedocs-hosted.com/en/latest/section-7.html
Remember, as FastQ file may contain perhaps millions of individual sequencing reads. When you use Trimmomatic, you will usually use a quality report (like ...
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29
NanoFilt - filtering and trimming of long read sequencing data
https://manpages.ubuntu.com/manpages/impish/man1/NanoFilt.1.html
--logfile LOGFILE Specify the path and filename for the log file. input input, uncompressed fastq file Options for filtering reads on.
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https://manpages.ubuntu.com/manpages/impish/man1/NanoFilt.1.html
--logfile LOGFILE Specify the path and filename for the log file. input input, uncompressed fastq file Options for filtering reads on.
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30
Filtering and quality assessment of raw FASTQ sequencing ...
https://www.researchgate.net/figure/Filtering-and-quality-assessment-of-raw-FASTQ-sequencing-data-RNA-seq-FASTQ-files_fig1_342415870
RNA-seq FASTQ files representing the 37 PE samples used in this analysis were filtered and trimmed using Trimmomatic software (a). Following trimming and ...
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https://www.researchgate.net/figure/Filtering-and-quality-assessment-of-raw-FASTQ-sequencing-data-RNA-seq-FASTQ-files_fig1_342415870
RNA-seq FASTQ files representing the 37 PE samples used in this analysis were filtered and trimmed using Trimmomatic software (a). Following trimming and ...
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31
Filter sequences by ID - Galaxy | Tool Shed
https://toolshed.g2.bx.psu.edu/repository/display_tool?repository_id=4963efc937542d6d&render_repository_actions_for=tool_shed&tool_config=%2Fsrv%2Ftoolshed%2Fmain%2Fvar%2Fdata%2Frepos%2F000%2Frepo_18%2Ftools%2Fseq_filter_by_id%2Fseq_filter_by_id.xml&changeset_revision=141612f8c3e3
Sequence file to be filtered: FASTA, FASTQ, or SFF format. Filter using the ID list from: Tabular file containing sequence identifiers:.
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https://toolshed.g2.bx.psu.edu/repository/display_tool?repository_id=4963efc937542d6d&render_repository_actions_for=tool_shed&tool_config=%2Fsrv%2Ftoolshed%2Fmain%2Fvar%2Fdata%2Frepos%2F000%2Frepo_18%2Ftools%2Fseq_filter_by_id%2Fseq_filter_by_id.xml&changeset_revision=141612f8c3e3
Sequence file to be filtered: FASTA, FASTQ, or SFF format. Filter using the ID list from: Tabular file containing sequence identifiers:.
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32
fastp: an ultra-fast all-in-one FASTQ preprocessor
https://academic.oup.com/bioinformatics/article/34/17/i884/5093234
Quality control and preprocessing of FASTQ files are essential to ... FASTQ preprocessor with useful quality control and data-filtering ...
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https://academic.oup.com/bioinformatics/article/34/17/i884/5093234
Quality control and preprocessing of FASTQ files are essential to ... FASTQ preprocessor with useful quality control and data-filtering ...
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33
dada2: filterAndTrim – R documentation - Quantargo
https://www.quantargo.com/help/r/latest/packages/dada2/NEWS/filterAndTrim
Filter and trim fastq file(s). Description. Filters and trims an input fastq file(s) (can be compressed) based on several ...
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https://www.quantargo.com/help/r/latest/packages/dada2/NEWS/filterAndTrim
Filter and trim fastq file(s). Description. Filters and trims an input fastq file(s) (can be compressed) based on several ...
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34
AfterQC: automatic filtering, trimming, error removing and ...
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5374548/
For each single or pair of FastQ files, AfterQC filters out bad ... Keywords: NGS, Overlap analysis, Quality control, Data filtering, Bubble.
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5374548/
For each single or pair of FastQ files, AfterQC filters out bad ... Keywords: NGS, Overlap analysis, Quality control, Data filtering, Bubble.
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35
Filter FASTQ - Galaxy
http://galaxy.med.tufts.edu/tool_runner?tool_id=fastq_filter
FASTQ File: Requires groomed data: if your data does not appear here try using the FASTQ groomer. Minimum Size: Maximum Size: A maximum size less than 1 ...
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http://galaxy.med.tufts.edu/tool_runner?tool_id=fastq_filter
FASTQ File: Requires groomed data: if your data does not appear here try using the FASTQ groomer. Minimum Size: Maximum Size: A maximum size less than 1 ...
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36
1616 Simple quality filtering for FASTQ files The FASTQ file format ...
https://www.coursehero.com/file/p53icms/1616-Simple-quality-filtering-for-FASTQ-files-The-FASTQ-file-format-was/
16.1.6Simple quality filtering for FASTQ filesThe FASTQ file format was introduced at Sanger and is now widely used for holding nucleotide sequencingreads ...
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https://www.coursehero.com/file/p53icms/1616-Simple-quality-filtering-for-FASTQ-files-The-FASTQ-file-format-was/
16.1.6Simple quality filtering for FASTQ filesThe FASTQ file format was introduced at Sanger and is now widely used for holding nucleotide sequencingreads ...
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37
Bioconductor Fastqcleaner - :: Anaconda.org
https://anaconda.org/bioconda/bioconductor-fastqcleaner
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files ... conda install -c bioconda bioconductor-fastqcleaner
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https://anaconda.org/bioconda/bioconductor-fastqcleaner
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files ... conda install -c bioconda bioconductor-fastqcleaner
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38
FASTX-Toolkit - Command Line Usage - Hannon Lab
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
[-i INFILE] = FASTA/Q input file. default is STDIN. ... If FASTA file is given, only nucleotides distribution is calculated ... FASTQ/A Artifacts Filter.
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http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
[-i INFILE] = FASTA/Q input file. default is STDIN. ... If FASTA file is given, only nucleotides distribution is calculated ... FASTQ/A Artifacts Filter.
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39
Quality Filtering - Genetic Diversity Centre (GDC) - ETHZ
https://www.gdc-docs.ethz.ch/GeneticDiversityAnalysis/GDA21/site/qf/
Challenges. We are going to do quality control and then filter the fastq files accordingly. When you are finished, you can use the next. Post your ...
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https://www.gdc-docs.ethz.ch/GeneticDiversityAnalysis/GDA21/site/qf/
Challenges. We are going to do quality control and then filter the fastq files accordingly. When you are finished, you can use the next. Post your ...
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40
Goals: Use basic command line programming to - QUBES Hub
https://qubeshub.org/publications/1092/serve/2/4139?el=1&download=1
Trim/filter low quality reads in FASTQ files ... the quality of the raw sequencing reads in each FASTQ formatted file. If the sequence.
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https://qubeshub.org/publications/1092/serve/2/4139?el=1&download=1
Trim/filter low quality reads in FASTQ files ... the quality of the raw sequencing reads in each FASTQ formatted file. If the sequence.
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41
filter_fasta.py – This script can be applied to remove ... - QIIME
http://qiime.org/scripts/filter_fasta.html
filter_fasta.py – This script can be applied to remove sequences from a fasta or fastq file based on input criteria.¶ ... Output: OTU map-based filtering: Keep ...
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http://qiime.org/scripts/filter_fasta.html
filter_fasta.py – This script can be applied to remove sequences from a fasta or fastq file based on input criteria.¶ ... Output: OTU map-based filtering: Keep ...
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42
Galaxy | NeLS |
https://galaxy-ntnu.bioinfo.no/toolshed_nels/repository/display_tool?repository_id=8fd0d0c10a1ce7c0&tool_config=%2Fhome%2Fgalaxy%2Ftool_shed_repositories%2F000%2Frepo_86%2Ffastq_screen%2Ffastq_screen.xml&changeset_revision=9f74b66db1f8
Filtering FastQ Files · fastq_screen --tag sample4.fastq. To filter the tag file, enter on the command line something similar to that below: · fastq_screen -- ...
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https://galaxy-ntnu.bioinfo.no/toolshed_nels/repository/display_tool?repository_id=8fd0d0c10a1ce7c0&tool_config=%2Fhome%2Fgalaxy%2Ftool_shed_repositories%2F000%2Frepo_86%2Ffastq_screen%2Ffastq_screen.xml&changeset_revision=9f74b66db1f8
Filtering FastQ Files · fastq_screen --tag sample4.fastq. To filter the tag file, enter on the command line something similar to that below: · fastq_screen -- ...
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43
Filter FASTQ by length job "currently running" for 24+ hrs.
https://biostar.usegalaxy.org/p/22423/
Hello! I am using Galaxy. I have a library of small RNA in FASTQ format that I am trying to filter by size. The file has around 38,000,000 reads and is ...
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https://biostar.usegalaxy.org/p/22423/
Hello! I am using Galaxy. I have a library of small RNA in FASTQ format that I am trying to filter by size. The file has around 38,000,000 reads and is ...
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44
Quality assessment & filtering - Plant Ecological Genomics
https://plantgenomics.univie.ac.at/rnaseq-introcourse/quality-assessment-filtering/
fastq files. Fastqc currently is not working in the vetgrid cluster. You can however run it in your local computer. For the purpose of this practical I will ...
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https://plantgenomics.univie.ac.at/rnaseq-introcourse/quality-assessment-filtering/
fastq files. Fastqc currently is not working in the vetgrid cluster. You can however run it in your local computer. For the purpose of this practical I will ...
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45
Software to filter errors in fastq files? - SEQanswers
https://www.seqanswers.com/forum/bioinformatics/bioinformatics-aa/6609-software-to-filter-errors-in-fastq-files?p=220024
but by default bowtie identifies the quality scale. however now i am piping the fastq file through the perl script from the link you ...
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https://www.seqanswers.com/forum/bioinformatics/bioinformatics-aa/6609-software-to-filter-errors-in-fastq-files?p=220024
but by default bowtie identifies the quality scale. however now i am piping the fastq file through the perl script from the link you ...
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46
Assessing & Filtering Illumina Short Read NGS Data using ...
https://works.bepress.com/raymond_enke/100/download/
The 1st step of any NGS analysis is to check the quality of the raw sequencing reads in each experimental. FASTQ file. If the sequence quality is poor, ...
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https://works.bepress.com/raymond_enke/100/download/
The 1st step of any NGS analysis is to check the quality of the raw sequencing reads in each experimental. FASTQ file. If the sequence quality is poor, ...
→ Check Latest Keyword Rankings ←
47
MATLAB seqfilter - MathWorks
https://www.mathworks.com/help/bioinfo/ref/seqfilter.html
This MATLAB function applies a filtering criterion to the sequences in fastqFile and saves the sequences that meet the criterion in a new FASTQ file.
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https://www.mathworks.com/help/bioinfo/ref/seqfilter.html
This MATLAB function applies a filtering criterion to the sequences in fastqFile and saves the sequences that meet the criterion in a new FASTQ file.
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48
fqtrim - CCB at JHU - Johns Hopkins University
https://ccb.jhu.edu/software/fqtrim/
fqtrim can be used as a pre-processing or filtering step for next-generation ... The program can take as input read sequence data in FASTA or FASTQ format ...
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https://ccb.jhu.edu/software/fqtrim/
fqtrim can be used as a pre-processing or filtering step for next-generation ... The program can take as input read sequence data in FASTA or FASTQ format ...
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49
Analysing raw sequencing reads with FASTQC for quality ...
https://medium.com/@shilparaopradeep/analysing-raw-sequencing-reads-with-fastqc-for-quality-control-and-filtering-cacaf06b8988
Quality control and filtering of sequencing reads is one of the most ... let's explore the structure of the FASTQ file and understand how ...
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https://medium.com/@shilparaopradeep/analysing-raw-sequencing-reads-with-fastqc-for-quality-control-and-filtering-cacaf06b8988
Quality control and filtering of sequencing reads is one of the most ... let's explore the structure of the FASTQ file and understand how ...
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50
FastqCleaner: an interactive Bioconductor ... - bioRxiv
https://www.biorxiv.org/content/10.1101/393140v3
... for quality-control, filtering and trimming of FASTQ files ... FastqCleaner combines the technology of Bioconductor for NGS data ...
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https://www.biorxiv.org/content/10.1101/393140v3
... for quality-control, filtering and trimming of FASTQ files ... FastqCleaner combines the technology of Bioconductor for NGS data ...
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51
modules/filtlong - nf-core
https://nf-co.re/modules/filtlong
Filtlong filters long reads based on quality measures or short read data. ... reads (file). Filtered (compressed) fastq file. *.fastq.gz ...
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https://nf-co.re/modules/filtlong
Filtlong filters long reads based on quality measures or short read data. ... reads (file). Filtered (compressed) fastq file. *.fastq.gz ...
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52
QC and filtering — Variant calling tutorial 1.0 documentation
http://bio.biomedicine.gu.se/~marcela/courses/2016/exome/quality.html
firefox fastqcRawdata/*.html &. Q. Is the data worth working with, why? Note. Almost all the programs have their own help file, so in case you want to know ...
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http://bio.biomedicine.gu.se/~marcela/courses/2016/exome/quality.html
firefox fastqcRawdata/*.html &. Q. Is the data worth working with, why? Note. Almost all the programs have their own help file, so in case you want to know ...
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53
Workshop 2: Short read data analysis. - University of York
https://www.york.ac.uk/res/dasmahapatra/teaching/MBiol_sequence_analysis/workshop2_2019.html
Now carry out the same quality filtering for the Sample2 and Sample3 fastq files. NB: Both cutadapt and fastqc take a while to run, which makes it challenging ...
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https://www.york.ac.uk/res/dasmahapatra/teaching/MBiol_sequence_analysis/workshop2_2019.html
Now carry out the same quality filtering for the Sample2 and Sample3 fastq files. NB: Both cutadapt and fastqc take a while to run, which makes it challenging ...
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54
FastqCleaner: an interactive Bioconductor application for ...
https://link.springer.com/article/10.1186/s12859-019-2961-8;
Here we present FastqCleaner, an R package with an offline-capable web application for QC, trimming and filtering of FASTQ files. The tool ...
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https://link.springer.com/article/10.1186/s12859-019-2961-8;
Here we present FastqCleaner, an R package with an offline-capable web application for QC, trimming and filtering of FASTQ files. The tool ...
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55
Trimming and Filtering - Sheffield Bioinformatics Core
https://sbc.shef.ac.uk/wrangling-genomics/03-trimming/index.html
We will use a program called Trimmomatic to filter poor quality reads and ... SRR_1056_1un.trimmed.fastq, the output file for orphaned reads from the _1 ...
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https://sbc.shef.ac.uk/wrangling-genomics/03-trimming/index.html
We will use a program called Trimmomatic to filter poor quality reads and ... SRR_1056_1un.trimmed.fastq, the output file for orphaned reads from the _1 ...
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56
Filtering with SAMTools - Core NGS Tools - UT Austin Wikis
https://wikis.utexas.edu/display/CoreNGSTools/Filtering+with+SAMTools
When secondary reads are reported, the total number of alignment records in the BAM file is greater than the number of reads in the input FASTQ ...
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https://wikis.utexas.edu/display/CoreNGSTools/Filtering+with+SAMTools
When secondary reads are reported, the total number of alignment records in the BAM file is greater than the number of reads in the input FASTQ ...
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57
Trim and filter reads - fastp - WorkflowHub
https://workflowhub.eu/workflows/224
What it does: Trims and filters raw sequence reads according to specified settings. Inputs: Long reads (format fastq); Short reads R1 and R2 ...
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https://workflowhub.eu/workflows/224
What it does: Trims and filters raw sequence reads according to specified settings. Inputs: Long reads (format fastq); Short reads R1 and R2 ...
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58
A quick introduction to the Bioconductor ShortRead package ...
https://darrenjw.wordpress.com/2010/11/29/a-quick-introduction-to-the-bioconductor-shortread-package-for-the-analysis-of-ngs-data/
Of course there is a bit of a problem with all of this post-hoc filtering when working with very large FASTQ files. The initial readFastq ...
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https://darrenjw.wordpress.com/2010/11/29/a-quick-introduction-to-the-bioconductor-shortread-package-for-the-analysis-of-ngs-data/
Of course there is a bit of a problem with all of this post-hoc filtering when working with very large FASTQ files. The initial readFastq ...
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59
FastqCleaner: an interactive Bioconductor application for ...
https://d-nb.info/1197752188/34
Open Access. FastqCleaner: an interactive Bioconductor application for quality-control, filtering and trimming of FASTQ files. Leandro Gabriel Roser*.
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https://d-nb.info/1197752188/34
Open Access. FastqCleaner: an interactive Bioconductor application for quality-control, filtering and trimming of FASTQ files. Leandro Gabriel Roser*.
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60
Problem filtering fastq files with PRINSEQ - Google Groups
https://groups.google.com/g/edwardslabtools/c/UCw9W6rYuxA
Hi there, I am using PRINSEQ for filtering my paired end illumina fastq files based on quality score, using the command:.
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https://groups.google.com/g/edwardslabtools/c/UCw9W6rYuxA
Hi there, I am using PRINSEQ for filtering my paired end illumina fastq files based on quality score, using the command:.
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61
Normalizing fastq data | EPI2ME Labs Blog
https://labs.epi2me.io/introducing-fastcat/
The fastq format is ubiquitous for storing sequencing reads. ... quality filtering, as well as producing a summary file containing per-read ...
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https://labs.epi2me.io/introducing-fastcat/
The fastq format is ubiquitous for storing sequencing reads. ... quality filtering, as well as producing a summary file containing per-read ...
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62
clean-fastq - seaconnect - GitLab
https://gitlab.mbb.univ-montp2.fr/seaconnect/clean-fastq
fastp provides fast all-in-one preprocessing for fastq files. bbduk filters or trims reads for adapters and contaminants using k-mers. Download ...
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https://gitlab.mbb.univ-montp2.fr/seaconnect/clean-fastq
fastp provides fast all-in-one preprocessing for fastq files. bbduk filters or trims reads for adapters and contaminants using k-mers. Download ...
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63
Illumina read filtering - Michael Amor
https://www.michaelamor.com/read-filtering
Move the raw Illumina reads (.fastq format) to the 00-raw directory within the new project. I use the FTP client FileZilla to transfer ...
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https://www.michaelamor.com/read-filtering
Move the raw Illumina reads (.fastq format) to the 00-raw directory within the new project. I use the FTP client FileZilla to transfer ...
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64
Manual - Prinseq - SourceForge
https://prinseq.sourceforge.net/manual.html
PRINSEQ provides filter, trim and reformat options for data ... Select your FASTA and QUAL files or your FASTQ file and click "Submit".
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https://prinseq.sourceforge.net/manual.html
PRINSEQ provides filter, trim and reformat options for data ... Select your FASTA and QUAL files or your FASTQ file and click "Submit".
→ Check Latest Keyword Rankings ←
65
Lab 5: FASTQ files and quality control
https://findleyfinseth.squarespace.com/s/Lab5.html
Understand the format of raw next generation sequence data (i.e., FASTQ files). Apply filtering packages ( FASTQC , trimmomatic ) and UNIX ...
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https://findleyfinseth.squarespace.com/s/Lab5.html
Understand the format of raw next generation sequence data (i.e., FASTQ files). Apply filtering packages ( FASTQC , trimmomatic ) and UNIX ...
→ Check Latest Keyword Rankings ←
66
NGS Week 2 Homework Assignment - RPubs
https://rpubs.com/linb27/864583
I used the relative path to write the processed fastq files for the ... Filtering result: reads passed filter: 34367822 reads failed due to ...
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https://rpubs.com/linb27/864583
I used the relative path to write the processed fastq files for the ... Filtering result: reads passed filter: 34367822 reads failed due to ...
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67
fastp: an ultra-fast all-in-one FASTQ preprocessor - PubAg
https://pubag.nal.usda.gov/catalog/6726534
It can perform quality control, adapter trimming, quality filtering, per-read quality pruning and many other operations with a single scan of the FASTQ data.
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https://pubag.nal.usda.gov/catalog/6726534
It can perform quality control, adapter trimming, quality filtering, per-read quality pruning and many other operations with a single scan of the FASTQ data.
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68
prinseq-lite.help.txt
https://vcru.wisc.edu/simonlab/bioinformatics/programs/prinseq/prinseq-lite.help.txt
Input file in FASTQ format that contains the sequence and quality data. ... the program from generating the output file(s) for data passing all filters.
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https://vcru.wisc.edu/simonlab/bioinformatics/programs/prinseq/prinseq-lite.help.txt
Input file in FASTQ format that contains the sequence and quality data. ... the program from generating the output file(s) for data passing all filters.
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69
Bio::Tradis::FilterTags - Filter tags in a fastq file - metacpan.org
https://metacpan.org/pod/Bio::Tradis::FilterTags
Reads in a fastq file with tradis tags already attached to the start of the sequence Filters reads that contain the provided tag Outputs a file *.tag.fastq ...
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https://metacpan.org/pod/Bio::Tradis::FilterTags
Reads in a fastq file with tradis tags already attached to the start of the sequence Filters reads that contain the provided tag Outputs a file *.tag.fastq ...
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70
BBDuk Guide - DOE Joint Genome Institute
https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/
It is capable of quality-trimming and filtering, adapter-trimming, ... BBDuk also supports input or output of paired reads in dual files using the in1, in2, ...
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https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/
It is capable of quality-trimming and filtering, adapter-trimming, ... BBDuk also supports input or output of paired reads in dual files using the in1, in2, ...
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71
5399. Filtering fastq files - Legacy GATK Forum - Google Sites
https://sites.google.com/a/broadinstitute.org/legacy-gatk-forum-discussions/2015-11-25-2015-07-16/5964-Filtering-fastq-files
Is there any way to filter my fastq files using gatk. I can filter sam, bam, vcf files using gatk and picard. I read all the tutorials in ...
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https://sites.google.com/a/broadinstitute.org/legacy-gatk-forum-discussions/2015-11-25-2015-07-16/5964-Filtering-fastq-files
Is there any way to filter my fastq files using gatk. I can filter sam, bam, vcf files using gatk and picard. I read all the tutorials in ...
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72
Trimming and filtering Oxford Nanopore sequencing reads
https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/
In short, quality scores were calculated differently from fastq file compared to albacore, but that has been fixed now. Cheers, Wouter. Like ...
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https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/
In short, quality scores were calculated differently from fastq file compared to albacore, but that has been fixed now. Cheers, Wouter. Like ...
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73
SMRT Analysis: Read filtering - mn/ibv/bioinfwiki - UiO
https://wiki.uio.no/mn/ibv/bioinfwiki/index.php/SMRT_Analysis:_Read_filtering
h5 files, the resulting file will NOT contain the bax.h5 part number). The bash5tools.py script can export reads both in the fasta and fastq ...
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https://wiki.uio.no/mn/ibv/bioinfwiki/index.php/SMRT_Analysis:_Read_filtering
h5 files, the resulting file will NOT contain the bax.h5 part number). The bash5tools.py script can export reads both in the fasta and fastq ...
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74
FASTQ Quality Filter : r/bioinformatics - Reddit
https://www.reddit.com/r/bioinformatics/comments/j4m6sb/fastq_quality_filter/
I am looking for a FASTQ quality filter in which I can actually ... If dealing with multiple files, you can use MultiQC to do Fastqc by bulk ...
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https://www.reddit.com/r/bioinformatics/comments/j4m6sb/fastq_quality_filter/
I am looking for a FASTQ quality filter in which I can actually ... If dealing with multiple files, you can use MultiQC to do Fastqc by bulk ...
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75
FastQ files and Quality Filtering - stechtmann/BL4300-5300 GitHub ...
https://github-wiki-see.page/m/stechtmann/BL4300-5300/wiki/FastQ-files-and-Quality-Filtering
FastQ files and Quality Filtering - stechtmann/BL4300-5300 GitHub Wiki ... Anatomy of a .fastq file; Phred Scores; Sequencing artifacts; Types of quality ...
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https://github-wiki-see.page/m/stechtmann/BL4300-5300/wiki/FastQ-files-and-Quality-Filtering
FastQ files and Quality Filtering - stechtmann/BL4300-5300 GitHub Wiki ... Anatomy of a .fastq file; Phred Scores; Sequencing artifacts; Types of quality ...
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76
View bam file in terminal. Usage - Red Huts Resort
http://redhutsresort.com/wp-admin/6ublb/view-bam-file-in-terminal.html
A SAM file (. gz The quality field is the most obvious filtering method. bam, . ... To start, let's compress a FASTQ file in GZIP format: > gzip reads.
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http://redhutsresort.com/wp-admin/6ublb/view-bam-file-in-terminal.html
A SAM file (. gz The quality field is the most obvious filtering method. bam, . ... To start, let's compress a FASTQ file in GZIP format: > gzip reads.
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77
Split bam file in two. I am doing RNA-seq using use galaxy ...
http://mitsubishi-sg.com/a2gc/split-bam-file-in-two.html
Optionally filter unique alignments by inspecting NH:i SAM attribute. ... In the world of genetics, often a large fastq file can be split to smaller fastq ...
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http://mitsubishi-sg.com/a2gc/split-bam-file-in-two.html
Optionally filter unique alignments by inspecting NH:i SAM attribute. ... In the world of genetics, often a large fastq file can be split to smaller fastq ...
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78
Pysam pileup. By voting up you can indicate which examples ...
http://shobhaenterprise.in/dcdk1h/pysam-pileup.html
In bioinformatics and biochemistry, the FASTA format is a text-based format for ... In case pileup () was filtering reads with low base quality, ...
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http://shobhaenterprise.in/dcdk1h/pysam-pileup.html
In bioinformatics and biochemistry, the FASTA format is a text-based format for ... In case pileup () was filtering reads with low base quality, ...
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79
a versatile aligning pipeline for bisulfite sequencing data
https://core.ac.uk/download/pdf/81872151.pdf
Moreover, BS-Seeker2 provides additional function for filtering out reads with ... and ATCGmap file formats for full representations of DNA ...
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https://core.ac.uk/download/pdf/81872151.pdf
Moreover, BS-Seeker2 provides additional function for filtering out reads with ... and ATCGmap file formats for full representations of DNA ...
→ Check Latest Keyword Rankings ←
80
Bamtools citation. Find changesets by keywords (author, files ...
http://slimsculptoc.com/wp-admin/tm1ay/bamtools-citation.html
Get statistics about a BAM, SAM or CRAM file. ). Strömberg, and G. bamtools merge -in ... For example: cd dir1; bamtools convert -format fastq -in in.
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http://slimsculptoc.com/wp-admin/tm1ay/bamtools-citation.html
Get statistics about a BAM, SAM or CRAM file. ). Strömberg, and G. bamtools merge -in ... For example: cd dir1; bamtools convert -format fastq -in in.
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81
Bamtools vs samtools. Samtools and BCFtools both use ...
http://businessdj.nl/dkths/bamtools-vs-samtools.html
The command bamtools split splits BAM file on user-specified property and creates ... the results are different. samtools “sort” When you align FASTQ files ...
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http://businessdj.nl/dkths/bamtools-vs-samtools.html
The command bamtools split splits BAM file on user-specified property and creates ... the results are different. samtools “sort” When you align FASTQ files ...
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82
Population admixtures in medaka inferred by multiple arbitrary ...
https://www.nature.com/articles/s41598-022-24498-7
Table 2 Results of sequence quality filtering and mapping on the ... in the raw fastq data that passed quality filtering with 'fastp'; ...
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https://www.nature.com/articles/s41598-022-24498-7
Table 2 Results of sequence quality filtering and mapping on the ... in the raw fastq data that passed quality filtering with 'fastp'; ...
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83
Molecular Data Analysis Using R - Page 83 - Google Books Result
https://books.google.com/books?id=XdbPDQAAQBAJ&pg=PA83&lpg=PA83&dq=filtering+fastq+file&source=bl&ots=dwEjlqkg7B&sig=ACfU3U24BW8zIT3-EGIc1F0DwkWd4U1j8g&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjCAhAD
Next, for each file, the function is run, and the list of result data ... Quality filtering of FASTQ files It is nice to have a general overview of the ...
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https://books.google.com/books?id=XdbPDQAAQBAJ&pg=PA83&lpg=PA83&dq=filtering+fastq+file&source=bl&ots=dwEjlqkg7B&sig=ACfU3U24BW8zIT3-EGIc1F0DwkWd4U1j8g&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjCAhAD
Next, for each file, the function is run, and the list of result data ... Quality filtering of FASTQ files It is nice to have a general overview of the ...
→ Check Latest Keyword Rankings ←
84
Developments in Bovine Immunology - An Integrated View
https://books.google.com/books?id=cy3yCgAAQBAJ&pg=PA22&lpg=PA22&dq=filtering+fastq+file&source=bl&ots=7k9ewRn7c9&sig=ACfU3U23D--ppZMtRScwmoRXefp_oyCSBw&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjGAhAD
The FastQC package was used to further assess the filtered individual fastq files, revealing that no further filtering steps were required.
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https://books.google.com/books?id=cy3yCgAAQBAJ&pg=PA22&lpg=PA22&dq=filtering+fastq+file&source=bl&ots=7k9ewRn7c9&sig=ACfU3U23D--ppZMtRScwmoRXefp_oyCSBw&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjGAhAD
The FastQC package was used to further assess the filtered individual fastq files, revealing that no further filtering steps were required.
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85
Official Gazette of the United States Patent and Trademark ...
https://books.google.com/books?id=w68eyqdDxfoC&pg=RA1-PA685&lpg=RA1-PA685&dq=filtering+fastq+file&source=bl&ots=-3SaP4NBHY&sig=ACfU3U1jCrvDySSdKTFLyfuanGInefakcg&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjFAhAD
42 EXO FILE 40 UNIX WORKSTATION 69 FSQ FILE FASTQ PLUS GENERATE 2D MESH 68 ( f ) ... and FILTER ORDER displaying said finite element analysis code .
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https://books.google.com/books?id=w68eyqdDxfoC&pg=RA1-PA685&lpg=RA1-PA685&dq=filtering+fastq+file&source=bl&ots=-3SaP4NBHY&sig=ACfU3U1jCrvDySSdKTFLyfuanGInefakcg&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjFAhAD
42 EXO FILE 40 UNIX WORKSTATION 69 FSQ FILE FASTQ PLUS GENERATE 2D MESH 68 ( f ) ... and FILTER ORDER displaying said finite element analysis code .
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86
Genotyping by Sequencing for Crop Improvement
https://books.google.com/books?id=COlmEAAAQBAJ&pg=PT238&lpg=PT238&dq=filtering+fastq+file&source=bl&ots=kJ4VTn1TsU&sig=ACfU3U28Mjk4-rEDioozdVFLX8Vq5CuLrw&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjEAhAD
Fast-GBS require raw input data in FASTQ format. ... In this file, we can define critical filtering options such as a minimal number of reads required to ...
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https://books.google.com/books?id=COlmEAAAQBAJ&pg=PT238&lpg=PT238&dq=filtering+fastq+file&source=bl&ots=kJ4VTn1TsU&sig=ACfU3U28Mjk4-rEDioozdVFLX8Vq5CuLrw&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjEAhAD
Fast-GBS require raw input data in FASTQ format. ... In this file, we can define critical filtering options such as a minimal number of reads required to ...
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87
Transcriptomics in Health and Disease - Page 18 - Google Books Result
https://books.google.com/books?id=fSpjEAAAQBAJ&pg=PA18&lpg=PA18&dq=filtering+fastq+file&source=bl&ots=OnFo8pR9xO&sig=ACfU3U2XckTlDWJ0BgL9HrxOaanioxd67Q&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjDAhAD
remove indexes, barcodes, and adapters and filter out the reads based on the quality metrics of the FASTQ files. For a comparison of some of the available ...
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https://books.google.com/books?id=fSpjEAAAQBAJ&pg=PA18&lpg=PA18&dq=filtering+fastq+file&source=bl&ots=OnFo8pR9xO&sig=ACfU3U2XckTlDWJ0BgL9HrxOaanioxd67Q&hl=en&sa=X&ved=2ahUKEwiSq-fy8tX7AhUZLUQIHbbZB90Q6AF6BQjDAhAD
remove indexes, barcodes, and adapters and filter out the reads based on the quality metrics of the FASTQ files. For a comparison of some of the available ...
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88
Whole Transcriptome Sequencing Reveals Gene Expression ...
https://pdfs.semanticscholar.org/45b4/a71baf738a24e3fc5a1668629d7d0845494b.pdf
whether a read passed filtering or not. Six sequence files were generated in FASTQ format (sequence read plus quality information in Phred format); each ...
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https://pdfs.semanticscholar.org/45b4/a71baf738a24e3fc5a1668629d7d0845494b.pdf
whether a read passed filtering or not. Six sequence files were generated in FASTQ format (sequence read plus quality information in Phred format); each ...
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89
Nestjs bull tutorial - jf-geldern.de
https://jf-geldern.de/nestjs-bull-tutorial.html
... 2021 · A FASTQ file is a text file that contains the sequence data from the clusters that pass filter on a flow cell (for more information on clusters ...
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https://jf-geldern.de/nestjs-bull-tutorial.html
... 2021 · A FASTQ file is a text file that contains the sequence data from the clusters that pass filter on a flow cell (for more information on clusters ...
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90
Qiime2 tutorial. 用iTOL网站快速绘制颜值最高的进化树！...
http://kfa-llc.com/wp-admin/uqv8/qiime2-tutorial.html
The Qiime2 Moving Pictures Tutorial starts with the initial file. ... After sequencing, you will get some (fastq/fast5/h5) files from the sequencing.
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http://kfa-llc.com/wp-admin/uqv8/qiime2-tutorial.html
The Qiime2 Moving Pictures Tutorial starts with the initial file. ... After sequencing, you will get some (fastq/fast5/h5) files from the sequencing.
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91
Htslib python. Download. The aim of pyhtslib is to provide the I ...
https://larina-jewellery.com/wp-admin/ibsm/htslib-python.html
Convert a single-ended fastq file to an unmapped CRAM. Open source tools and preprints for in vitro biology, genetics, bioinformatics, crispr, ...
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https://larina-jewellery.com/wp-admin/ibsm/htslib-python.html
Convert a single-ended fastq file to an unmapped CRAM. Open source tools and preprints for in vitro biology, genetics, bioinformatics, crispr, ...
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92
Importing FASTQ files and FASTQ file links - BIONUMERICS
https://www.applied-maths.com/tutorial/importing-fastq-files-and-fastq-file-links
Essentially, there are two ways to import FASTQ files in your BioNumerics database: the default import method stores the sequence reads in the BioNumerics ...
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https://www.applied-maths.com/tutorial/importing-fastq-files-and-fastq-file-links
Essentially, there are two ways to import FASTQ files in your BioNumerics database: the default import method stores the sequence reads in the BioNumerics ...
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