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1
Up-to-date catalogues of yeast protein complexes - PubMed
https://pubmed.ncbi.nlm.nih.gov/19095691/
This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes. The ...
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https://pubmed.ncbi.nlm.nih.gov/19095691/
This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes. The ...
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2
[PDF] Up-to-date catalogues of yeast protein complexes
https://www.semanticscholar.org/paper/Up-to-date-catalogues-of-yeast-protein-complexes-Pu-Wong/bf2c0cc639d7bb59897b9dd33148478a21f999c2
This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes.
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https://www.semanticscholar.org/paper/Up-to-date-catalogues-of-yeast-protein-complexes-Pu-Wong/bf2c0cc639d7bb59897b9dd33148478a21f999c2
This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes.
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3
Up-to-date catalogues of yeast protein complexes. Nucleic ...
https://www.researchgate.net/publication/23676652_Up-to-date_catalogues_of_yeast_protein_complexes_Nucleic_Acids_Res
This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes.
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https://www.researchgate.net/publication/23676652_Up-to-date_catalogues_of_yeast_protein_complexes_Nucleic_Acids_Res
This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes.
→ Check Latest Keyword Rankings ←
4
Up-to-date catalogues of yeast protein complexes - 百度学术
https://xueshu.baidu.com/usercenter/paper/show?paperid=e47552f85ac30d278219339e7016140f
This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes.
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https://xueshu.baidu.com/usercenter/paper/show?paperid=e47552f85ac30d278219339e7016140f
This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes.
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5
About - CYC2008 - Wodak Lab
https://wodaklab.org/cyc2008
CYC2008 provides an up-to-date reference set of yeast protein complexes for both experimental biologists who work on yeast protein complexes and computational ...
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https://wodaklab.org/cyc2008
CYC2008 provides an up-to-date reference set of yeast protein complexes for both experimental biologists who work on yeast protein complexes and computational ...
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6
Temporal dynamics of protein complexes in PPI Networks
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-S17-S16
In this work, using yeast as our model, we incorporate 'time' in the ... Cho E, Wodak S: Up-to-date catalogues of yeast protein complexes.
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https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-S17-S16
In this work, using yeast as our model, we incorporate 'time' in the ... Cho E, Wodak S: Up-to-date catalogues of yeast protein complexes.
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7
Predicting Physical Interactions between Protein Complexes
https://www.sciencedirect.com/science/article/pii/S1535947620310872
An evaluation against manually curated physical complex-complex interactions in yeast revealed that 50% of these interactions could be predicted in this manner.
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https://www.sciencedirect.com/science/article/pii/S1535947620310872
An evaluation against manually curated physical complex-complex interactions in yeast revealed that 50% of these interactions could be predicted in this manner.
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8
Predicting Physical Interactions between Protein Complexes
https://www.mcponline.org/article/S1535-9476(20)31087-2/fulltext
An evaluation against manually curated physical complex-complex interactions in yeast revealed that 50% of these interactions could be ...
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https://www.mcponline.org/article/S1535-9476(20)31087-2/fulltext
An evaluation against manually curated physical complex-complex interactions in yeast revealed that 50% of these interactions could be ...
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9
Prediction of Heterodimeric Protein Complexes from Weighted ...
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065265
Protein complexes play crucial roles in a variety of biological processes, ... catalogue of 408 manually curated yeast protein complexes ...
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https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065265
Protein complexes play crucial roles in a variety of biological processes, ... catalogue of 408 manually curated yeast protein complexes ...
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10
A framework combines supervised learning and dense ...
https://link.springer.com/article/10.1007/s11704-021-0476-8
Pu S, Wong J, Turner B, Cho E, Wodak S J. Up-to-date catalogues of yeast protein complexes. Nucleic Acids Research, 2009, 37(3): 825–831.
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https://link.springer.com/article/10.1007/s11704-021-0476-8
Pu S, Wong J, Turner B, Cho E, Wodak S J. Up-to-date catalogues of yeast protein complexes. Nucleic Acids Research, 2009, 37(3): 825–831.
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11
Employing functional interactions for characterisation and ...
http://www.inderscience.com/link.php?id=48962
'Analyzing yeast protein-protein interaction data obtained from different sources'. ... 'Up-to-date catalogues of yeast protein complexes'.
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http://www.inderscience.com/link.php?id=48962
'Analyzing yeast protein-protein interaction data obtained from different sources'. ... 'Up-to-date catalogues of yeast protein complexes'.
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12
A mixed clustering coefficient centrality for identifying essential ...
https://arxiv.org/pdf/2003.05057
protein complexes and topological properties to determine the essentiality of ... Up-to-date catalogues of yeast protein complexes, Nucleic.
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https://arxiv.org/pdf/2003.05057
protein complexes and topological properties to determine the essentiality of ... Up-to-date catalogues of yeast protein complexes, Nucleic.
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13
Interaction landscape of membrane-protein complexes ... - Gale
https://go.gale.com/ps/i.do?id=GALE%7CA303896225&sid=googleScholar&v=2.1&it=r&linkaccess=abs&issn=00280836&p=HRCA&sw=w
Large-scale affinity purification studies of soluble-protein complexes have ... B., Cho, E. & Wodak, S.J. Up-to-date catalogues of yeast protein complexes.
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https://go.gale.com/ps/i.do?id=GALE%7CA303896225&sid=googleScholar&v=2.1&it=r&linkaccess=abs&issn=00280836&p=HRCA&sw=w
Large-scale affinity purification studies of soluble-protein complexes have ... B., Cho, E. & Wodak, S.J. Up-to-date catalogues of yeast protein complexes.
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14
Computed structures of core eukaryotic protein complexes
https://www.science.org/doi/10.1126/science.abm4805
Protein-protein interactions play critical roles in biology, but the structures of many eukaryotic protein complexes are unknown, ...
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https://www.science.org/doi/10.1126/science.abm4805
Protein-protein interactions play critical roles in biology, but the structures of many eukaryotic protein complexes are unknown, ...
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15
Protein Complexes Prediction Method Based on Core ... - MDPI
https://www.mdpi.com/1422-0067/18/9/1910/htm
In fact, protein complexes are the key molecular entities to perform cellular ... B.; Cho, E.; Wodak, S.J. Up-to-date catalogues of yeast protein complexes.
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https://www.mdpi.com/1422-0067/18/9/1910/htm
In fact, protein complexes are the key molecular entities to perform cellular ... B.; Cho, E.; Wodak, S.J. Up-to-date catalogues of yeast protein complexes.
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16
Un–complicating protein complex prediction - bioRxiv
https://www.biorxiv.org/content/10.1101/017376v1.full.pdf
Identification of protein complexes from proteomic experiments is crucial to ... Up-to-date catalogues of yeast protein complexes.
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https://www.biorxiv.org/content/10.1101/017376v1.full.pdf
Identification of protein complexes from proteomic experiments is crucial to ... Up-to-date catalogues of yeast protein complexes.
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17
Supportness of the protein complex standards in PPI networks
https://www.tandfonline.com/doi/full/10.1080/24751839.2021.1989241
A protein complex is a collection of two or more associated proteins that interact ... Up-to-date catalogues of yeast protein complexes.
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https://www.tandfonline.com/doi/full/10.1080/24751839.2021.1989241
A protein complex is a collection of two or more associated proteins that interact ... Up-to-date catalogues of yeast protein complexes.
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18
A New Method for Recognizing Protein Complexes Based on ...
https://www.frontiersin.org/articles/10.3389/fgene.2021.792265/full
The recognition of protein complexes is vital in research on evolution analysis. ... Up-to-date Catalogues of Yeast Protein Complexes.
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https://www.frontiersin.org/articles/10.3389/fgene.2021.792265/full
The recognition of protein complexes is vital in research on evolution analysis. ... Up-to-date Catalogues of Yeast Protein Complexes.
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19
CUBCO+: prediction of protein complexes based on min-cut ...
https://appliednetsci.springeropen.com/counter/pdf/10.1007/s41109-022-00508-5.pdf
PPIs that affect the protein complex prediction algorithms. To address this issue, ... Pu S et al (2008) Up-to-date catalogues of yeast protein complexes.
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https://appliednetsci.springeropen.com/counter/pdf/10.1007/s41109-022-00508-5.pdf
PPIs that affect the protein complex prediction algorithms. To address this issue, ... Pu S et al (2008) Up-to-date catalogues of yeast protein complexes.
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20
Temporal dynamics of protein complexes in PPI Networks
https://files.core.ac.uk/pdf/2612/81868689.pdf
helped to catalogue significant amount of protein interac- tions in organisms ... of hubs in the yeast PPI network, and said 'date' hubs.
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https://files.core.ac.uk/pdf/2612/81868689.pdf
helped to catalogue significant amount of protein interac- tions in organisms ... of hubs in the yeast PPI network, and said 'date' hubs.
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21
CUBCO+: Prediction of Protein Complexes ... - Research Square
https://www.researchsquare.com/article/rs-1438773/v1.pdf
approaches for protein complex prediction in multiple groups, ... Up-to-date catalogues of yeast protein complexes. Nucleic Acids.
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https://www.researchsquare.com/article/rs-1438773/v1.pdf
approaches for protein complex prediction in multiple groups, ... Up-to-date catalogues of yeast protein complexes. Nucleic Acids.
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22
Heterodimeric protein complex identification
https://dl.acm.org/doi/10.1145/2147805.2147882
It is a challenging problem to predict heterodimeric protein complexes accurately in size and membership, because, in yeast, those complexes ...
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https://dl.acm.org/doi/10.1145/2147805.2147882
It is a challenging problem to predict heterodimeric protein complexes accurately in size and membership, because, in yeast, those complexes ...
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23
Global organization of protein complexome in the yeast ...
https://ui.adsabs.harvard.edu/abs/2010arXiv1011.2699L/abstract
We analyze the topological network structure of protein complexes and their component proteins in the budding yeast in terms of the bipartite network and its ...
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https://ui.adsabs.harvard.edu/abs/2010arXiv1011.2699L/abstract
We analyze the topological network structure of protein complexes and their component proteins in the budding yeast in terms of the bipartite network and its ...
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24
Controllability in protein interaction networks - PNAS
https://www.pnas.org/doi/pdf/10.1073/pnas.1311231111
protein complexes and significantly appear in bottleneck inter- ... Wong J, Turner B, Cho E, Wodak SJ (2009) Up-to-date catalogues of yeast.
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https://www.pnas.org/doi/pdf/10.1073/pnas.1311231111
protein complexes and significantly appear in bottleneck inter- ... Wong J, Turner B, Cho E, Wodak SJ (2009) Up-to-date catalogues of yeast.
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25
On the Planarity of Validated Complexes of Model Organisms ...
https://par.nsf.gov/servlets/purl/10187223
motivated measure of real protein complexes in the network model, important for ... Turner, B., Cho, E., Wodak, S.J.: Up-to-date catalogues of yeast protein.
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https://par.nsf.gov/servlets/purl/10187223
motivated measure of real protein complexes in the network model, important for ... Turner, B., Cho, E., Wodak, S.J.: Up-to-date catalogues of yeast protein.
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26
(AP-MS) experiments. - Abstract - Europe PMC
https://europepmc.org/article/pmc/pmc3536891
Many exist as part of multiprotein complexes ranging in size from two interacting ... Wodak S. J. (2009) Up-to-date catalogues of yeast protein complexes.
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https://europepmc.org/article/pmc/pmc3536891
Many exist as part of multiprotein complexes ranging in size from two interacting ... Wodak S. J. (2009) Up-to-date catalogues of yeast protein complexes.
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27
WCOACH: Protein complex prediction in weighted PPI networks
http://bioinformatics.aut.ac.ir/wcoach/
WCOACH [1] is a graph clustering algorithm to detect protein complexes in ... (2009) Up-to-date catalogues of yeast protein complexes, Nucleic acids ...
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http://bioinformatics.aut.ac.ir/wcoach/
WCOACH [1] is a graph clustering algorithm to detect protein complexes in ... (2009) Up-to-date catalogues of yeast protein complexes, Nucleic acids ...
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28
Identifying Protein Complexes from Dynamic Temporal ...
https://www.hindawi.com/journals/bmri/2019/3726721/
1] discovered the core-attachment structure of yeast protein complexes based on ... and S. J. Wodak, “Up-to-date catalogues of yeast protein complexes,” ...
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https://www.hindawi.com/journals/bmri/2019/3726721/
1] discovered the core-attachment structure of yeast protein complexes based on ... and S. J. Wodak, “Up-to-date catalogues of yeast protein complexes,” ...
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29
Wodak SJ | SGD - Saccharomyces Genome Database
https://www.yeastgenome.org/author/Wodak_SJ
(2012) Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae. ... (2009) Up-to-date catalogues of yeast protein complexes.
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https://www.yeastgenome.org/author/Wodak_SJ
(2012) Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae. ... (2009) Up-to-date catalogues of yeast protein complexes.
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30
Impact of low-confidence interactions on computational ...
https://www.worldscientific.com/doi/pdf/10.1142/S0219720020500250
which is a bottleneck in identifying protein complexes correctly. ... Turner B, Cho E, Wodak SJ, Up-to-date catalogues of yeast protein.
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https://www.worldscientific.com/doi/pdf/10.1142/S0219720020500250
which is a bottleneck in identifying protein complexes correctly. ... Turner B, Cho E, Wodak SJ, Up-to-date catalogues of yeast protein.
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31
A Hybrid method for protein complex prediction in weighted ...
https://philsciletters.net/2017/PSL%202017-vol10-no01-p50-57%20Beltran.pdf
about protein complexes are not reflected in these methods. This ... algorithm was run on the BioGRID and DIP yeast PPI networks,.
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https://philsciletters.net/2017/PSL%202017-vol10-no01-p50-57%20Beltran.pdf
about protein complexes are not reflected in these methods. This ... algorithm was run on the BioGRID and DIP yeast PPI networks,.
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32
(PDF) Global landscape of protein complexes in the yeast ...
https://www.academia.edu/9800563/Global_landscape_of_protein_complexes_in_the_yeast_Saccharomyces_cerevisiae
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae ... Identification of protein-protein interactions often provides insight into protein ...
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https://www.academia.edu/9800563/Global_landscape_of_protein_complexes_in_the_yeast_Saccharomyces_cerevisiae
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae ... Identification of protein-protein interactions often provides insight into protein ...
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33
Comparative assessment of large-scale data sets of protein ...
http://depts.washington.edu/sfields/pdf/vonmering_nature.pdf
analysis, and we relied on manually curated catalogues of known protein complexes (Munich Information Center for Protein. Sequences, MIPS17, and the Yeast ...
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http://depts.washington.edu/sfields/pdf/vonmering_nature.pdf
analysis, and we relied on manually curated catalogues of known protein complexes (Munich Information Center for Protein. Sequences, MIPS17, and the Yeast ...
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34
Protein-protein Interaction Networks of E. coli and S ...
https://cyberleninka.org/article/n/184701.pdf
Furthermore, essential genes are enriched in protein complexes in both ... Turner, B., Cho, E. & Wodak, S. J. Up-to-date catalogues of yeast.
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https://cyberleninka.org/article/n/184701.pdf
Furthermore, essential genes are enriched in protein complexes in both ... Turner, B., Cho, E. & Wodak, S. J. Up-to-date catalogues of yeast.
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35
Functional geometry of protein interactomes - UPCommons
https://upcommons.upc.edu/bitstream/handle/2117/187923/malod-dognin2019.pdf
of human and yeast, we show that simplets can be used to relate the local geometry around proteins in simplicial complexes with their biological functions.
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https://upcommons.upc.edu/bitstream/handle/2117/187923/malod-dognin2019.pdf
of human and yeast, we show that simplets can be used to relate the local geometry around proteins in simplicial complexes with their biological functions.
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36
Introduction - Gerstein Lab
http://papers.gersteinlab.org/e-print/funcgrid/manuscript.doc
Yeast two hybrid assays explore protein-protein interactions in a pair-wise ... These properties of the complexes catalogue often allow a less ambiguous and ...
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http://papers.gersteinlab.org/e-print/funcgrid/manuscript.doc
Yeast two hybrid assays explore protein-protein interactions in a pair-wise ... These properties of the complexes catalogue often allow a less ambiguous and ...
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37
The origins and evolution of functional modules - Journals
https://royalsocietypublishing.org/doi/10.1098/rstb.2005.1807
The datasets of protein complexes in yeast are the manually curated complexes ... 1999) to identify functional modules (for example, Date & Marcotte 2003; ...
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https://royalsocietypublishing.org/doi/10.1098/rstb.2005.1807
The datasets of protein complexes in yeast are the manually curated complexes ... 1999) to identify functional modules (for example, Date & Marcotte 2003; ...
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38
BMC Bioinformatics - TSpace
https://tspace.library.utoronto.ca/bitstream/1807/83073/1/12859_2002_Article_52.pdf
An automated method for finding molecular complexes in large protein ... Protein interaction and complex information from the yeast.
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https://tspace.library.utoronto.ca/bitstream/1807/83073/1/12859_2002_Article_52.pdf
An automated method for finding molecular complexes in large protein ... Protein interaction and complex information from the yeast.
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39
A high-accuracy consensus map of yeast protein complexes ...
http://www.marcottelab.org/paper-pdfs/BMCBioinformatics_YeastIntegratedPPI_2007_preprint.pdf
Background: Identifying all protein complexes in an organism is a major goal of ... yeast protein-protein interactions to date, although a substantial ...
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http://www.marcottelab.org/paper-pdfs/BMCBioinformatics_YeastIntegratedPPI_2007_preprint.pdf
Background: Identifying all protein complexes in an organism is a major goal of ... yeast protein-protein interactions to date, although a substantial ...
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40
Feature Attributes details - CMU School of Computer Science
https://www.cs.cmu.edu/~qyj/papers_sulp/proteins05_pages/features.html
The identity of the proteins located in these complexes is then determined ... MIPS protein class catalog: Yeast proteins are assigned to different protein ...
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https://www.cs.cmu.edu/~qyj/papers_sulp/proteins05_pages/features.html
The identity of the proteins located in these complexes is then determined ... MIPS protein class catalog: Yeast proteins are assigned to different protein ...
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41
Analyzing yeast protein–protein interaction data obtained from ...
https://cpb-us-e1.wpmucdn.com/blogs.uoregon.edu/dist/f/5492/files/2014/04/bader-1uqumra.pdf
ten per protein3. Two recent high-throughput analyses of protein complex com- position in S. cerevisiae by Gavin et al.4 and Ho et al.5 have generat-.
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https://cpb-us-e1.wpmucdn.com/blogs.uoregon.edu/dist/f/5492/files/2014/04/bader-1uqumra.pdf
ten per protein3. Two recent high-throughput analyses of protein complex com- position in S. cerevisiae by Gavin et al.4 and Ho et al.5 have generat-.
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42
Yeast Interacting Proteins Database - LSDB Archive - NBDC
https://dbarchive.biosciencedbc.jp/en/yeast-y2h/desc.html
Article title: Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all ...
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https://dbarchive.biosciencedbc.jp/en/yeast-y2h/desc.html
Article title: Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all ...
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43
On the number of protein±protein interactions in the yeast ...
http://ppi.fli-leibniz.de/PPI_PDF_free/grigoriev2003.pdf
Scale-up of protein±protein interaction screens using the yeast ... spectrometry studies of purified protein complexes (4,5), ... catalogues/complexes).
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http://ppi.fli-leibniz.de/PPI_PDF_free/grigoriev2003.pdf
Scale-up of protein±protein interaction screens using the yeast ... spectrometry studies of purified protein complexes (4,5), ... catalogues/complexes).
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44
Virtual Lab Simulation Catalog | Labster
https://www.labster.com/simulations
Discover Labster's award-winning virtual lab catalog for skills training and science theory. Browse simulations in Biology, Chemistry, ...
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https://www.labster.com/simulations
Discover Labster's award-winning virtual lab catalog for skills training and science theory. Browse simulations in Biology, Chemistry, ...
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45
Systematic identification of protein complexes in ...
https://portal.findresearcher.sdu.dk/en/publications/systematic-identification-of-protein-complexes-in-saccharomyces-c
Beginning with 10% of predicted yeast proteins as baits, we detected 3,617 associated proteins covering 25% of the yeast proteome. Numerous protein complexes ...
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https://portal.findresearcher.sdu.dk/en/publications/systematic-identification-of-protein-complexes-in-saccharomyces-c
Beginning with 10% of predicted yeast proteins as baits, we detected 3,617 associated proteins covering 25% of the yeast proteome. Numerous protein complexes ...
→ Check Latest Keyword Rankings ←
46
Digitala Vetenskapliga Arkivet - DiVA portal
https://www.diva-portal.org/smash/record.jsf?pid=diva2:436593
We analyze the topological network structure of protein complexes and their component proteins in the budding yeast in terms of the ...
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https://www.diva-portal.org/smash/record.jsf?pid=diva2:436593
We analyze the topological network structure of protein complexes and their component proteins in the budding yeast in terms of the ...
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47
List of websites founded before 1995 - Wikipedia
https://en.wikipedia.org/wiki/List_of_websites_founded_before_1995
The first website was created in August 1991 by Tim Berners-Lee at CERN, a European nuclear research agency. Berners-Lee's WorldWideWeb browser was made ...
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https://en.wikipedia.org/wiki/List_of_websites_founded_before_1995
The first website was created in August 1991 by Tim Berners-Lee at CERN, a European nuclear research agency. Berners-Lee's WorldWideWeb browser was made ...
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48
Advances in Swarm Intelligence: 9th International ...
https://books.google.com/books?id=5SpgDwAAQBAJ&pg=PA111&lpg=PA111&dq=up+to+date+catalogues+of+yeast+protein+complexes&source=bl&ots=4Us5Hv3lCJ&sig=ACfU3U1R1WLn8CbUBeB_bYajAHr_GnoRNQ&hl=en&sa=X&ved=2ahUKEwjp9vKh6Nz7AhVzKlkFHYY1A_0Q6AF6BQjCARAD
... A core-attachment based method to detect protein complexes in PPI networks. ... Cho, E., Wodak, S.J.: Up-to-date catalogues of yeast protein complexes.
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https://books.google.com/books?id=5SpgDwAAQBAJ&pg=PA111&lpg=PA111&dq=up+to+date+catalogues+of+yeast+protein+complexes&source=bl&ots=4Us5Hv3lCJ&sig=ACfU3U1R1WLn8CbUBeB_bYajAHr_GnoRNQ&hl=en&sa=X&ved=2ahUKEwjp9vKh6Nz7AhVzKlkFHYY1A_0Q6AF6BQjCARAD
... A core-attachment based method to detect protein complexes in PPI networks. ... Cho, E., Wodak, S.J.: Up-to-date catalogues of yeast protein complexes.
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49
Bioinformatics Research and Applications: 9th International ...
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